ViewGene
Locus Name:
GeneID:
Location:

GeneID:4443
TrivialName: PA14_04760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04760
PAO1 Ortholog Locus:PA0363
Sequence Length:480
Protein Length:159
Start: 421850
Stop: 421371
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03752.1|AE004474_4 (AE004474) phosphopantetheine adenylyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 159/159 (100%), Positives = 159/159 (100%)
Sequence:
ATGAACCGAGTGCTGTACCCAGGCACCTTCGATCCCATCACCAAGGGTCACGGCGATCTGATCGAACGTGCT
TCACGGCTTTTCGACCATGTGATCATCGCGGTCGCCGCCAGCCCCAAGAAGAACCCCCTGTTCAGCCTGGAA
CAGCGGGTGGCGCTGGCCCAGGAGGTCACCAAGCACCTGCCGAACGTCGAGGTGGTGGGCTTCTCCACCCTG
CTGGCGCACTTCGTCAAGGAGCAGAAGGCGAATGTCTTCCTCCGCGGCCTGCGCGCGGTTTCCGACTTCGAG
TACGAGTTCCAGTTGGCCAACATGAACCGCCAGCTCGCCCCCGACGTGGAAAGCATGTTCCTCACCCCGTCG
GAGAAGTATTCCTTCATTTCCTCGACGCTGGTCCGGGAAATCGCCGCTCTCGGCGGGGATATCAGCAAGTTC
GTGCATCCGGCCGTGGCAGACGCCCTGGCGGAACGTTTCAAGCGCTGA
Translation:
MNRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFSTL
LAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKF
VHPAVADALAERFKR*
AnnotationID:4449GeneID:4443
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 05:05:01
Gene Name:coaD
Confidence Code:2
GeneProduct:phosphopantetheine adenylyltransferase
Cell Localization:()
Synonyms:kdtB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0669
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:2.7.7.3
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70688.1|AE016712_6 (AE016793) pantetheine-phosphate adenylyltransferase [Pseudomonas
           putida KT2440]
          Length = 161

 Score =  293 bits (749), Expect = 3e-79
 Identities = 146/159 (91%), Positives = 153/159 (96%)

>gb|AAO53961.1| (AE016857) pantetheine-phosphate adenylyltransferase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 159

 Score =  290 bits (741), Expect = 3e-78
 Identities = 145/159 (91%), Positives = 151/159 (94%)

>gb|AAN57643.1|AE015900_3 (AE015900) phosphopantetheine adenylyltransferase [Shewanella
           oneidensis MR-1]
          Length = 163

 Score =  223 bits (569), Expect = 2e-58
 Identities = 109/156 (69%), Positives = 130/156 (83%)








 
Structural Features:
COG0669, CoaD, Phosphopantetheine adenylyltransferase 
[Coenzyme metabolism]
CD-Length = 159 residues,  99.4% aligned
Score =  246 bits (630), Expect = 9e-67
Identities = 106/158 (67%), Positives = 128/158 (81%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8887




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26030




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33700




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4443_cdd.html


    		




 
URL:

















    ReferenceID:35403




  
Author/Investigator(s):
        Geerlof A, Lewendon A, Shaw WV.





  
Title:
        Purification and characterization of phosphopantetheine adenylyltransferase from Escherichia coli.




  
PubMed:
        10480925


MedLine:
        




    
Source:
J Biol Chem. 1999 Sep 17;274(38):27105-11.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10480925









           
Homologs By Global Alignment 

           

       



     
Gene ID:4443
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6786
                           PA0363_tr
                           translation of PA0363
                           159
                           99.99
                           99.99
                           0
                           797.0
     

     
     
181720
                           gb|AAG03752.1|AE004474_4
                           (AE004474) phosphopantetheine adenylyltransferase [Pseudomonas aeruginosa PAO1]
                           159
                           99.99
                           99.99
                           0
                           797.0
     

     
     
181722
                           gb|AAO53961.1|
                           (AE016857) pantetheine-phosphate adenylyltransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           159
                           91.19
                           94.96
                           0
                           741.0
     

     
     
181721
                           gb|AAN70688.1|AE016712_6
                           (AE016793) pantetheine-phosphate adenylyltransferase [Pseudomonas putida KT2440]
                           161
                           90.68
                           95.03
                           2
                           749.0
     

     
     
181723
                           gb|AAN57643.1|AE015900_3
                           (AE015900) phosphopantetheine adenylyltransferase [Shewanella oneidensis MR-1]
                           163
                           66.87
                           79.75
                           4
                           565.0
     

     






      

          
GC ORFID: 47445How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0363Glimmer Score: 

          
Start: 6223192Stop: 6222713

          
Length: 480


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0363 translation of PA0363Homolog Bit Score 311.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6824 (ORF: BLASTX 291.0)

          
GC ORF Sequence

           
ATGAACCGAGTGCTGTACCCAGGCACCTTCGATCCCATCACCAAGGGTCACGGCGATCTGATCGAACGTGCT 
TCACGGCTTTTCGACCATGTGATCATCGCGGTCGCCGCCAGCCCCAAGAAGAACCCCCTGTTCAGCCTGGAA 
CAGCGGGTGGCGCTGGCCCAGGAGGTCACCAAGCACCTGCCGAACGTCGAGGTGGTGGGCTTCTCCACCCTG 
CTGGCGCACTTCGTCAAGGAGCAGAAGGCGAATGTCTTCCTCCGCGGCCTGCGCGCGGTTTCCGACTTCGAG 
TACGAGTTCCAGTTGGCCAACATGAACCGCCAGCTCGCCCCCGACGTGGAAAGCATGTTCCTCACCCCGTCG 
GAGAAGTATTCCTTCATTTCCTCGACGCTGGTCCGGGAAATCGCCGCTCTCGGCGGGGATATCAGCAAGTTC 
GTGCATCCGGCCGTGGCAGACGCCCTGGCGGAACGTTTCAAGCGCTGA