ViewGene
Locus Name:
GeneID:
Location:

GeneID:4441
TrivialName: PA14_65380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65380
PAO1 Ortholog Locus:PA4948
Sequence Length:468
Protein Length:155
Start: 5824974
Stop: 5824507
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08333.1|AE004907_11 (AE004907) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/155 (99%), Positives = 154/155 (99%)
Sequence:
GTGTCTGAAGTGATCCTGTCCGCCGAAGGGGAAGACGCGATGCTCGAACTGGGCGGGCGCATCGCCCGGGTC
AGCGGGGGGCAGGGGGTGATCTACCTGCATGGCGACCTCGGCGCCGGCAAGACCACCCTCTCGCGCGGCATC
CTGCGCGGCCTCGGCCATGCCGGCTCGGTGAAAAGCCCGACCTTTACCCTGGTCGAGCCTTACGAAATCGGC
GAGCTGCGCGCCTACCATTTCGACCTGTACCGGCTCGCCGATGCGGAGGAATTGGAGTTCTTCGGCATCCGC
GACTATTTCGATGGCAGCGCACTCTGTCTGATCGAGTGGCCCGAGCGCGGTGCGGGCGTTTTGCCAACCGCC
GATCTGGACATTACCATTACTGCCCAAGCGGGTGGACGGACACTGCGCCTGGTACCGCACGGTGCGCGGGGC
GAAGCCTGGTGTGCCACCCTGACCATGGGAGCATGA
Translation:
MSEVILSAEGEDAMLELGGRIARVSGGQGVIYLHGDLGAGKTTLSRGILRGLGHAGSVKSPTFTLVEPYEIG
ELRAYHFDLYRLADAEELEFFGIRDYFDGSALCLIEWPERGAGVLPTADLDITITAQAGGRTLRLVPHGARG
EAWCATLTMGA*
AnnotationID:4447GeneID:4441
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 14:02:31
Gene Name:
Confidence Code:3
GeneProduct:putative ATPase
Cell Localization:()
Synonyms:PA4948
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative kinase
Functional Category Confidence Code:5
COGs:COG0802
Secondary Functional Category(ies):Two-component regulatory systems
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL23177.1| (AE008904) putative nucleotide-binding protein [Salmonella
           typhimurium LT2]
          Length = 153

 Score =  172 bits (435), Expect = 8e-43
 Identities = 85/151 (56%), Positives = 103/151 (68%)








 
Structural Features:
COG0802, COG0802, Predicted ATPase or kinase 
CD-Length = 149 residues,  96.6% aligned
Score =  180 bits (457), Expect = 8e-47
Identities = 84/144 (58%), Positives = 98/144 (68%), Gaps = 1/144 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15090




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26026




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35075




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4441_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4441
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6784
                           PA4948_tr
                           translation of PA4948
                           155
                           99.35
                           99.35
                           0
                           798.0
     

     
     
181648
                           gb|AAG08333.1|AE004907_11
                           (AE004907) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           155
                           98.70
                           99.35
                           0
                           795.0
     

     
     
181649
                           gb|AAN70465.1|AE016688_4
                           (AE016792) conserved hypothetical protein TIGR00150 [Pseudomonas putida KT2440]
                           157
                           64.96
                           77.70
                           2
                           549.0
     

     
     
181650
                           gb|AAO58374.1|
                           (AE016873) conserved hypothetical protein TIGR00150 [Pseudomonas syringae pv. tomato str. DC3000]
                           156
                           60.25
                           70.51
                           15
                           506.0
     

     
     
181653
                           gb|AAM84214.1|AE013665_3
                           (AE013665) hypothetical protein [Yersinia pestis KIM]
                           159
                           55.97
                           66.66
                           7
                           438.0
     

     






      

          
GC ORFID: 47443How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4948Glimmer Score: 

          
Start: 5088655Stop: 5088188

          
Length: 468


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4948 translation of PA4948Homolog Bit Score 311.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3426 (ORF: BLASTX 219.0), t_PA4948 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCTGAAGTGATCCTGTCCGCCGAAGGGGAAGACGCGATGCTCGAACTGGGCGGGCGCATCGCCCGGGTC 
AGCGGGGGGCAGGGGGTGATCTACCTGCATGGCGACCTCGGCGCCGGCAAGACCACCCTCTCGCGCGGCATC 
CTGCGCGGCCTCGGCCATGCCGGCTCGGTGAAAAGCCCGACCTTTACCCTGGTCGAGCCTTACGAAATCGGC 
GAGCTGCGCGCCTACCATTTCGACCTGTACCGGCTCGCCGATGCGGAGGAATTGGAGTTCTTCGGCATCCGC 
GACTATTTCGATGGCAGCGCACTCTGTCTGATCGAGTGGCCCGAGCGCGGTGCGGGCGTTTTGCCAACCGCC 
GATCTGGACATTACCATTACTGCCCAAGCGGGTGGACGGACACTGCGCCTGGTACCGCACGGTGCGCGGGGC 
GAAGCCTGGTGTGCCACCCTGACCATGGGAGCATGA