ViewGene
Locus Name:
GeneID:
Location:

GeneID:4440
TrivialName: PA14_08740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08740
PAO1 Ortholog Locus:PA4272
Sequence Length:501
Protein Length:166
Start: 745034
Stop: 745534
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07660.1|AE004843_2 (AE004843) 50S ribosomal protein L10 [Pseudomonas aeruginosa PAO1]
Identities = 166/166 (100%), Positives = 166/166 (100%)
Sequence:
GTGGCAATTAAACTCGAAGACAAGAAGGCCATCGTCGCTGAAGTCAACGAGGCTGCCAAAGCTGCCCTGTCC
GCTGTCGTGGCCGATGCCCGTGGCGTGACCGTAGGCGCCATGACCGGACTCCGTAAAGAGGCCCGCGAAGCT
GGTGTGTACGTGAAAGTCGTACGTAACACCCTGCTCAAGCGCGCCGTTGAAGGCACCCAGTTCGACGTGCTC
AACGACGTGTTCAAAGGCCCGACCCTGATCGCTTTCTCCAACGAACATCCGGGCGCTGCCGCTCGTATCTTC
CGTGAGTTCGCCAAGGGTCAGGACAAGTTCGAGATCAAGGCGGCTGCCTTCGAGGGTCAGTTCCTCGCAGCC
AATCAGATCGACGTACTGGCAAGCCTGCCGACCTACGACGAAGCCGTATCGCAGCTGATGAGCGTGATTCAG
GGCGCTACCAGCAAGCTGGCTCGTACTCTGGCGGCCATTCGCGACCAGAAAGAAGCTGCTGCCGCCTAA
Translation:
MAIKLEDKKAIVAEVNEAAKAALSAVVADARGVTVGAMTGLRKEAREAGVYVKVVRNTLLKRAVEGTQFDVL
NDVFKGPTLIAFSNEHPGAAARIFREFAKGQDKFEIKAAAFEGQFLAANQIDVLASLPTYDEAVSQLMSVIQ
GATSKLARTLAAIRDQKEAAAA*
AnnotationID:4446GeneID:4440
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 17:05:56
Gene Name:rplJ
Confidence Code:2
GeneProduct:50S ribosomal protein L10
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0244,pfam00466
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54159.1| (AE016858) ribosomal protein L10 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 166

 Score =  287 bits (734), Expect = 2e-77
 Identities = 151/166 (90%), Positives = 160/166 (96%)

>gb|AAN66075.1|AE016236_9 (AE016775) ribosomal protein L10 [Pseudomonas putida KT2440]
          Length = 166

 Score =  286 bits (731), Expect = 4e-77
 Identities = 148/166 (89%), Positives = 159/166 (95%)

>gb|AAN53307.1|AE015471_12 (AE015471) ribosomal protein L10 [Shewanella oneidensis MR-1]
          Length = 166

 Score =  227 bits (578), Expect = 2e-59
 Identities = 118/166 (71%), Positives = 140/166 (84%), Gaps = 1/166 (0%)






 
Structural Features:
COG0244, RplJ, Ribosomal protein L10 
[Translation, ribosomal structure and biogenesis]
CD-Length = 175 residues,  92.6% aligned
Score =  145 bits (368), Expect = 2e-36
Identities = 77/162 (47%), Positives = 106/162 (65%), Gaps = 1/162 (0%)

pfam00466, Ribosomal_L10, Ribosomal protein L10. 
CD-Length = 100 residues,  99.0% aligned
Score = 82.2 bits (203), Expect = 3e-17







   
Genomic Context:






   
Comment:


















    ReferenceID:15088




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26024




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36639




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4440_cdd.html


    		




 
URL:

















    ReferenceID:36777




  
Author/Investigator(s):
        Post LE, Strycharz GD, Nomura M, Lewis H, Dennis PP.





  
Title:
        Nucleotide sequence of the ribosomal protein gene cluster adjacent to the gene for RNA polymerase subunit beta in Escherichia coli.




  
PubMed:
        377281


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 1979 Apr;76(4):1697-701.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=377281

















    ReferenceID:36781




  
Author/Investigator(s):
        Dovgas NV, Vinokurov LM, Velmoga IS, Alakhov YB, Ovchinnikov YA.





  
Title:
        The primary structure of protein L10 from Escherichia coli ribosomes.




  
PubMed:
        782920


MedLine:
        




    
Source:
FEBS Lett. 1976 Aug 1;67(1):58-61.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=76257859&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:4440
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6783
                           PA4272_tr
                           translation of PA4272
                           166
                           99.99
                           99.99
                           0
                           796.0
     

     
     
181586
                           gb|AAG07660.1|AE004843_2
                           (AE004843) 50S ribosomal protein L10 [Pseudomonas aeruginosa PAO1]
                           166
                           99.39
                           99.99
                           0
                           793.0
     

     
     
181587
                           gb|AAO54159.1|
                           (AE016858) ribosomal protein L10 [Pseudomonas syringae pv. tomato str. DC3000]
                           166
                           90.36
                           96.38
                           0
                           730.0
     

     
     
181588
                           gb|AAN66075.1|AE016236_9
                           (AE016775) ribosomal protein L10 [Pseudomonas putida KT2440]
                           166
                           88.55
                           95.78
                           0
                           727.0
     

     
     
181589
                           gb|AAN53307.1|AE015471_12
                           (AE015471) ribosomal protein L10 [Shewanella oneidensis MR-1]
                           167
                           70.05
                           83.83
                           2
                           576.0
     

     






      

          
GC ORFID: 47442How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4272Glimmer Score: 

          
Start: 4208905Stop: 4208405

          
Length: 501


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4272 translation of PA4272Homolog Bit Score 311.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene83 (ORF: BLASTX 288.0), t_PA4272 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCAATTAAACTCGAAGACAAGAAGGCCATCGTCGCTGAAGTCAACGAGGCTGCCAAAGCTGCCCTGTCC 
GCTGTCGTGGCCGATGCCCGTGGCGTGACCGTAGGCGCCATGACCGGACTCCGTAAAGAGGCCCGCGAAGCT 
GGTGTGTACGTGAAAGTCGTACGTAACACCCTGCTCAAGCGCGCCGTTGAAGGCACCCAGTTCGACGTGCTC 
AACGACGTGTTCAAAGGCCCGACCCTGATCGCTTTCTCCAACGAACATCCGGGCGCTGCCGCTCGTATCTTC 
CGTGAGTTCGCCAAGGGTCAGGACAAGTTCGAGATCAAGGCGGCTGCCTTCGAGGGTCAGTTCCTCGCAGCC 
AATCAGATCGACGTACTGGCAAGCCTGCCGACCTACGACGAAGCCGTATCGCAGCTGATGAGCGTGATTCAG 
GGCGCTACCAGCAAGCTGGCTCGTACTCTGGCGGCCATTCGCGACCAGAAAGAAGCTGCTGCCGCCTAA