ViewGene

Locus Name:
GeneID:
Location:

GeneID:444
TrivialName: PA14_69300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69300
PAO1 Ortholog Locus:PA5248
Sequence Length:1902
Protein Length:633
Start: 6182511
Stop: 6180610
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08633.1|AE004937_5 (AE004937) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 629/633 (99%), Positives = 632/633 (99%)
Sequence:
ATGCACCCTCCGAAAATCCTGCTGTGGCTGCTGCCGCTGGTCTGCGCGTTCAGCCTTGGAGCTATTGCCGAC
ACGGCCGTCGACCCCTCCCAAGCCTTGCATCTGTTGAGTTACCTGGCGGCCGACTATCCGCCGACCGTGGCT
GACGGCAAGATCGTCGACCCCAGCGAATACCAGGAACAGGTGGAGTTCGTTGGCAACCTGCAGGCATTGGTC
CTGACCCTGCCGATGCGCCCCGAGCGCGCCGAGCTGGAGAGGGGGGTCGCCAGCCTGCGCCAGGCCATCGAG
CAGCGCTTGCCGGGAAGGGACGTGGCCCTCCAGGCGCGCAACCTCGAGGCACGGGTGGCGGATATCTACCAG
GTGGTGCAGACCCCCGCGATCACCCCCGACCCGAGCCGCGCAGCGCCGATCTATGCCCAGCAGTGCGCGATC
TGCCATGGCGATGCGGGCAAGGGCGACGGCCCCGCCGGCATCGGCCTGGAACCGCCGCCGGCGAACCTCACC
GATCGCCAGCGCCTCGACCACCTGAGCCTCTACGACCTGCGTAACGTCATTGGCCTGGGCGTGGCCGGCACC
GACATGCCGGCGTTCGCCGACCAGCTCGACGAACGCCAGCGCTGGGACCTGGCCAGCTATGTGGCCGGCCTG
AGCGCCGGCAGTGCGCAGCCGGACAAGGCCCATGCCTACCCGCTGGCGACCCTGGCCACGCAGACTCCGGCC
GAAGTCGCCGAGCACGACGGCGAGGCCGCTGCGGAGAGCTTCCGCGCCCTGCGTGCGCATCCGCCGCTGGAG
CAGCGCGGTCCTGGGCAGTTGATCGACTATACCGCCGCCACCCTGGACAAGAGTTTCGCGGTCTATCGCGAA
GGTGACCGCGACCAGGCCTACGACCTGTCGGTGGCGGCCTACCTGGAAGGCTTCGAGCTGGTGGAAAGCTCG
CTGGACAACGTCGACGCCAATTTGCGCCGCTCCACCGAGAAGCAACTGATGGCCTACCGCCAGGCGTTGCGC
GATGGCCTCCCGGAAACCCAGGTGGCGCAACAGCTGGAGCTGGCCAAGGGCAAGCTGGCGGAGGCCGCCAAG
CAGCTTGGCGGCGACTCGCTGAGTTTCTCCATCAGTTTCGTTTCCGCCCTGTTGATCCTGTTGCGCGAAGGG
GTAGAGGCAATCCTGGTGCTTGCCGCCATCCTCGGCTTCTTGCGCAATACCGGGCAGGAAAGTGCCGTGCGT
GGCGTGCACGTCGGCTGGGGGCTGGCCTTCGTCGCCGGCTTCGCCACCTGGGCGTTGGCCGCCTATGTGATC
GATATCGGCGGTGCCCAGCGCGAGCTGATGGAGGGCTTCACCTCGCTGTTCGCCTGCGTGATGGTGCTCTGG
CTCGGCGTCTGGATGCACGACCGCCGCCACGCGGCAGCCTGGCAGGACTACATCCGCAGCAGCCTGGTGGGC
GGTGGTGGACGCTTCGGCTTCGCAGTGCTGGCGTTCTTCTCGGTCTACCGCGAGTTGTTCGAGGTCATCCTG
TTCTACGAAACCCTCTGGTTGCAGGCCGGACCGGCCGGGCACAATGCCGTGATCGGCGGCGCGGCGACCGCC
GTGGTCCTGCTGATCGGCCTGGCCTGGGTGATCCTGCGTGGCTCGGCGAAACTGCCGCTGGGGTTGTTCTTC
AGCATCAACGCGGCGTTGCTCTGTGCGCTCTCGGTGGTGTTCGCCGGACATGGCGTCATCGCCTTGCAGGAA
GCCGGGGTGATCGGCACCCGTCCGGTGCCGTTCTTCGACTTCGACTGGCTGGGGATCAAGGCCGACGCCTAT
TCGCTGTCGGCCCAGGCCATGGCGCTGGTGGCCATCGCGCTGCTCTACGGGCGTAGCCGGATCGTCGAGCGC
CAGCGTGCGGCGGCCAACGCCGCCGACTGA
Translation:
MHPPKILLWLLPLVCAFSLGAIADTAVDPSQALHLLSYLAADYPPTVADGKIVDPSEYQEQVEFVGNLQALV
LTLPMRPERAELERGVASLRQAIEQRLPGRDVALQARNLEARVADIYQVVQTPAITPDPSRAAPIYAQQCAI
CHGDAGKGDGPAGIGLEPPPANLTDRQRLDHLSLYDLRNVIGLGVAGTDMPAFADQLDERQRWDLASYVAGL
SAGSAQPDKAHAYPLATLATQTPAEVAEHDGEAAAESFRALRAHPPLEQRGPGQLIDYTAATLDKSFAVYRE
GDRDQAYDLSVAAYLEGFELVESSLDNVDANLRRSTEKQLMAYRQALRDGLPETQVAQQLELAKGKLAEAAK
QLGGDSLSFSISFVSALLILLREGVEAILVLAAILGFLRNTGQESAVRGVHVGWGLAFVAGFATWALAAYVI
DIGGAQRELMEGFTSLFACVMVLWLGVWMHDRRHAAAWQDYIRSSLVGGGGRFGFAVLAFFSVYRELFEVIL
FYETLWLQAGPAGHNAVIGGAATAVVLLIGLAWVILRGSAKLPLGLFFSINAALLCALSVVFAGHGVIALQE
AGVIGTRPVPFFDFDWLGIKADAYSLSAQAMALVAIALLYGRSRIVERQRAAANAAD*
AnnotationID:453GeneID:444
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 07:07:39
Gene Name:
Confidence Code:3
GeneProduct:putative iron permease protein
Cell Localization:()
Synonyms:PA5248
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative cytochrome c family protein
Functional Category Confidence Code:5
COGs:COG0672
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53695.1| (AE016856) lead uptake protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 632

 Score =  880 bits (2274), Expect = 0.0
 Identities = 446/630 (70%), Positives = 514/630 (81%), Gaps = 6/630 (0%)

>gb|AAN65813.1|AE016210_1 (AE016774) cytochrome c family protein [Pseudomonas putida KT2440]
          Length = 636

 Score =  860 bits (2223), Expect = 0.0
 Identities = 435/631 (68%), Positives = 509/631 (80%), Gaps = 5/631 (0%)

Structural Features:
COG0672, FTR1, High-affinity Fe2+/Pb2+ permease 
[Inorganic ion transport and metabolism]
CD-Length = 383 residues, 100.0% aligned
Score =  230 bits (588), Expect = 3e-61
Identities = 97/402 (24%), Positives = 152/402 (37%), Gaps = 21/402 (5%)
Genomic Context:
Comment:
ReferenceID:891
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18033
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34834
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:444_cdd.html
URL:
Homologs By Global Alignment
Gene ID:444

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
761 PA5248_tr translation of PA5248 633 99.36 99.84 0 3195.0
33329 gb|AAG08633.1|AE004937_5 (AE004937) hypothetical protein PA5248 [Pseudomonas aeruginosa PAO1] 633 99.36 99.84 0 3195.0
33330 gb|AAO53695.1| (AE016856) lead uptake protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 639 69.95 80.59 13 2275.0
33331 gb|AAN65813.1|AE016210_1 (AE016774) cytochrome c family protein [Pseudomonas putida KT2440] 641 68.17 80.03 13 2222.0
33332 emb|CAD84205.1| (BX321857) Cytochrome c, class I [Nitrosomonas europaea ATCC 19718] 675 41.03 55.25 70 1157.0
GC ORFID: 43446How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5248Glimmer Score:
Start: 5446198Stop: 5444297
Length: 1902
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5248 translation of PA5248Homolog Bit Score 1235.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4077 (ORF: BLASTX 875.0), t_PA5248 (ORF: GLIMMER)
GC ORF Sequence
ATGCACCCTCCGAAAATCCTGCTGTGGCTGCTGCCGCTGGTCTGCGCGTTCAGCCTTGGAGCTATTGCCGAC
ACGGCCGTCGACCCCTCCCAAGCCTTGCATCTGTTGAGTTACCTGGCGGCCGACTATCCGCCGACCGTGGCT
GACGGCAAGATCGTCGACCCCAGCGAATACCAGGAACAGGTGGAGTTCGTTGGCAACCTGCAGGCATTGGTC
CTGACCCTGCCGATGCGCCCCGAGCGCGCCGAGCTGGAGAGGGGGGTCGCCAGCCTGCGCCAGGCCATCGAG
CAGCGCTTGCCGGGAAGGGACGTGGCCCTCCAGGCGCGCAACCTCGAGGCACGGGTGGCGGATATCTACCAG
GTGGTGCAGACCCCCGCGATCACCCCCGACCCGAGCCGCGCAGCGCCGATCTATGCCCAGCAGTGCGCGATC
TGCCATGGCGATGCGGGCAAGGGCGACGGCCCCGCCGGCATCGGCCTGGAACCGCCGCCGGCGAACCTCACC
GATCGCCAGCGCCTCGACCACCTGAGCCTCTACGACCTGCGTAACGTCATTGGCCTGGGCGTGGCCGGCACC
GACATGCCGGCGTTCGCCGACCAGCTCGACGAACGCCAGCGCTGGGACCTGGCCAGCTATGTGGCCGGCCTG
AGCGCCGGCAGTGCGCAGCCGGACAAGGCCCATGCCTACCCGCTGGCGACCCTGGCCACGCAGACTCCGGCC
GAAGTCGCCGAGCACGACGGCGAGGCCGCTGCGGAGAGCTTCCGCGCCCTGCGTGCGCATCCGCCGCTGGAG
CAGCGCGGTCCTGGGCAGTTGATCGACTATACCGCCGCCACCCTGGACAAGAGTTTCGCGGTCTATCGCGAA
GGTGACCGCGACCAGGCCTACGACCTGTCGGTGGCGGCCTACCTGGAAGGCTTCGAGCTGGTGGAAAGCTCG
CTGGACAACGTCGACGCCAATTTGCGCCGCTCCACCGAGAAGCAACTGATGGCCTACCGCCAGGCGTTGCGC
GATGGCCTCCCGGAAACCCAGGTGGCGCAACAGCTGGAGCTGGCCAAGGGCAAGCTGGCGGAGGCCGCCAAG
CAGCTTGGCGGCGACTCGCTGAGTTTCTCCATCAGTTTCGTTTCCGCCCTGTTGATCCTGTTGCGCGAAGGG
GTAGAGGCAATCCTGGTGCTTGCCGCCATCCTCGGCTTCTTGCGCAATACCGGGCAGGAAAGTGCCGTGCGT
GGCGTGCACGTCGGCTGGGGGCTGGCCTTCGTCGCCGGCTTCGCCACCTGGGCGTTGGCCGCCTATGTGATC
GATATCGGCGGTGCCCAGCGCGAGCTGATGGAGGGCTTCACCTCGCTGTTCGCCTGCGTGATGGTGCTCTGG
CTCGGCGTCTGGATGCACGACCGCCGCCACGCGGCAGCCTGGCAGGACTACATCCGCAGCAGCCTGGTGGGC
GGTGGTGGACGCTTCGGCTTCGCAGTGCTGGCGTTCTTCTCGGTCTACCGCGAGTTGTTCGAGGTCATCCTG
TTCTACGAAACCCTCTGGTTGCAGGCCGGACCGGCCGGGCACAATGCCGTGATCGGCGGCGCGGCGACCGCC
GTGGTCCTGCTGATCGGCCTGGCCTGGGTGATCCTGCGTGGCTCGGCGAAACTGCCGCTGGGGTTGTTCTTC
AGCATCAACGCGGCGTTGCTCTGTGCGCTCTCGGTGGTGTTCGCCGGACATGGCGTCATCGCCTTGCAGGAA
GCCGGGGTGATCGGCACCCGTCCGGTGCCGTTCTTCGACTTCGACTGGCTGGGGATCAAGGCCGACGCCTAT
TCGCTGTCGGCCCAGGCCATGGCGCTGGTGGCCATCGCGCTGCTCTACGGGCGTAGCCGGATCGTCGAGCGC
CAGCGTGCGGCGGCCAACGCCGCCGACTGA