ViewGene

Locus Name:
GeneID:
Location:

GeneID:4438
TrivialName: PA14_27950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27950
PAO1 Ortholog Locus:PA2797
Sequence Length:483
Protein Length:160
Start: 2419182
Stop: 2419664
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06185.1|AE004707_4 (AE004707) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 160/160 (100%), Positives = 160/160 (100%)
Sequence:
ATGAGTACCGGTAAAATCCAGTTTGCCGAACAGAACGGCTCCTTCGTTCTGAAATTCGTCGGTGAGGTCCGC
CTCACCCTGTGCTCGGCCCTGGATTCCACCATCGAAAAGATCTTCGCTGCGCTGAATTTCTCGGCGATCATC
ATCGATCTTACGGAAACCCAGAGCATCGATAGCACCACGCTCGGCCTACTGGCCAAGCTGTCCATCCTGTCG
CGGCAGAAAATCGGCCTGTTGCCCACGCTGGTGACCACCAATCCGGACATTACCCGTCTGTTGCAGTCGATG
GGTTTCGATCAGGTGTTCAATATCGTCGATCGTCCGATTCCGTGTCCGGAGTGCCTGTCCGACCTGCCGCCG
CAGGACCAGTCGGAAGATGTGGTGCGCGACAAGGTCCTGGAGGCGCACCGCATCCTGATGGGCCTCAACGAA
TCCAACCGCGAAGCCTTCCACGACCTGGTCAGCGCCCTGGAGCGCCATTAA
Translation:
MSTGKIQFAEQNGSFVLKFVGEVRLTLCSALDSTIEKIFAALNFSAIIIDLTETQSIDSTTLGLLAKLSILS
RQKIGLLPTLVTTNPDITRLLQSMGFDQVFNIVDRPIPCPECLSDLPPQDQSEDVVRDKVLEAHRILMGLNE
SNREAFHDLVSALERH*
AnnotationID:4444GeneID:4438
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 03:03:54
Gene Name:
Confidence Code:3
GeneProduct:putative anti-anti-sigma factor
Cell Localization:()
Synonyms:PA2797
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1366
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67779.1|AE016409_5 (AE016782) anti-anti-sigma factor [Pseudomonas putida KT2440]
          Length = 160

 Score =  281 bits (720), Expect = 8e-76
 Identities = 140/159 (88%), Positives = 155/159 (97%)

>gb|AAO55635.1| (AE016863) anti-anti-sigma factor, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 161

 Score =  270 bits (689), Expect = 3e-72
 Identities = 135/158 (85%), Positives = 151/158 (95%)

Structural Features:
COG1366, SpoIIAA, Anti-anti-sigma regulatory factor 
(antagonist of anti-sigma factor) 
[Signal transduction mechanisms] 
CD-Length = 117 residues,  80.3% aligned
Score = 55.4 bits (133), Expect = 3e-09
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Genomic Context:
Comment:
ReferenceID:8877
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26020
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36257
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4438_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4438

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6781 PA2797_tr translation of PA2797 160 99.99 99.99 0 798.0
181481 gb|AAG06185.1|AE004707_4 (AE004707) hypothetical protein PA2797 [Pseudomonas aeruginosa PAO1] 160 99.99 99.99 0 798.0
181482 gb|AAN67779.1|AE016409_5 (AE016782) anti-anti-sigma factor [Pseudomonas putida KT2440] 160 87.50 96.87 0 719.0
181483 gb|AAO55635.1| (AE016863) anti-anti-sigma factor, putative [Pseudomonas syringae pv. tomato str. DC3000] 161 83.85 93.78 1 687.0
GC ORFID: 47440How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2797Glimmer Score:
Start: 2534744Stop: 2534262
Length: 483
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA2797 translation of PA2797Homolog Bit Score 311.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene905 (ORF: BLASTX 270.0), t_PA2797 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTACCGGTAAAATCCAGTTTGCCGAACAGAACGGCTCCTTCGTTCTGAAATTCGTCGGTGAGGTCCGC
CTCACCCTGTGCTCGGCCCTGGATTCCACCATCGAAAAGATCTTCGCTGCGCTGAATTTCTCGGCGATCATC
ATCGATCTTACGGAAACCCAGAGCATCGATAGCACCACGCTCGGCCTACTGGCCAAGCTGTCCATCCTGTCG
CGGCAGAAAATCGGCCTGTTGCCCACGCTGGTGACCACCAATCCGGACATTACCCGTCTGTTGCAGTCGATG
GGTTTCGATCAGGTGTTCAATATCGTCGATCGTCCGATTCCGTGTCCGGAGTGCCTGTCCGACCTGCCGCCG
CAGGACCAGTCGGAAGATGTGGTGCGCGACAAGGTCCTGGAGGCGCACCGCATCCTGATGGGCCTCAACGAA
TCCAACCGCGAAGCCTTCCACGACCTGGTCAGCGCCCTGGAGCGCCATTAA