ViewGene
Locus Name:
GeneID:
Location:

GeneID:4437
TrivialName: PA14_29010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29010
PAO1 Ortholog Locus:PA2718
Sequence Length:489
Protein Length:162
Start: 2508825
Stop: 2508337
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06106.1|AE004700_2 (AE004700) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 159/162 (98%), Positives = 160/162 (98%)
Sequence:
ATGAAAATCGGCGAACTGGCCAAGCTCACCGGCCTGGCGACATCGCGCATCCGCTTCTACGAGGCCAGCGGC
CTGATCCGCTCGCAGCGCAAGGCCAACGGCTACCGCGACTATGCGGCAGACACCGTGTGGATCCTGGAGCTG
GTCACCGGCGCCCAGGGCGCCGGCTTCTCCCTGGAGGAGATCGCTCGCCTGCTGCCGAGCGGCGACGGCGCC
TGGCAGCACGGCGAGCTGCTCGAAGGCTTGCGCCGCAAGGTGGCCGAGATCGAGGCCCTGCAACGACGCCTG
GAACAGAACAAGGCACAATTGCTGGTGGCCATCGAAAGCATCGAGAACAAGCCGGACGGCCTGCAGTGCACG
GAAAACACCCAGCGCGTGCTGGAGCGCCTGCGCGAGGAAGGCCCTCCCCAGACGGTCGGGCGTCCACGGCAA
ACCCGCTCGCGGGGGTCCTCTCCCACGCCGGCGGAGCAGCGGCTTTCCGACGCTTGA
Translation:
MKIGELAKLTGLATSRIRFYEASGLIRSQRKANGYRDYAADTVWILELVTGAQGAGFSLEEIARLLPSGDGA
WQHGELLEGLRRKVAEIEALQRRLEQNKAQLLVAIESIENKPDGLQCTENTQRVLERLREEGPPQTVGRPRQ
TRSRGSSPTPAEQRLSDA*
AnnotationID:4443GeneID:4437
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 07:07:47
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, MerR family
Cell Localization:()
Synonyms:PA2718
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01282,cd01108,COG0789
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68598.1|AE016491_1 (AE016785) transcriptional regulator, MerR family [Pseudomonas
           putida KT2440]
          Length = 159

 Score =  183 bits (465), Expect = 3e-46
 Identities = 93/148 (62%), Positives = 112/148 (75%), Gaps = 1/148 (0%)

>gb|AAL54259.1| (AE009734) MERCURIC RESISTANCE OPERON REGULATORY PROTEIN [Brucella
           melitensis 16M]
          Length = 154

 Score =  142 bits (357), Expect = 1e-33
 Identities = 79/150 (52%), Positives = 100/150 (66%), Gaps = 6/150 (4%)






 
Structural Features:
cd01282, HTH_MERR_3, Helix-turn-helix MERR transcription regulator, subgroup 3. 
CD-Length = 111 residues,  99.1% aligned
Score = 80.0 bits (197), Expect = 1e-16

cd01108, HTH_CueR, Helix-turn-helix transcription regulator CueR.
CD-Length = 126 residues,  96.0% aligned
Score = 77.1 bits (190), Expect = 8e-16

COG0789, SoxR, Predicted transcriptional regulators [Transcription]
CD-Length = 124 residues,  93.5% aligned
Score = 69.8 bits (170), Expect = 1e-13
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 3/116 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8875




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26018




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38090




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4437_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4437
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6780
                           PA2718_tr
                           translation of PA2718
                           162
                           98.14
                           98.76
                           0
                           797.0
     

     
     
181474
                           gb|AAG06106.1|AE004700_2
                           (AE004700) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           162
                           98.14
                           98.76
                           0
                           797.0
     

     
     
181475
                           gb|AAN68598.1|AE016491_1
                           (AE016785) transcriptional regulator, MerR family [Pseudomonas putida KT2440]
                           163
                           58.89
                           72.39
                           5
                           463.0
     

     
     
181477
                           gb|AAL54259.1|
                           (AE009734) MERCURIC RESISTANCE OPERON REGULATORY PROTEIN [Brucella melitensis 16M]
                           169
                           48.52
                           60.94
                           22
                           360.0
     

     
     
181478
                           gb|AAN33429.1|AE014524_4
                           (AE014524) transcriptional regulator, MerR family [Brucella suis 1330]
                           169
                           48.52
                           60.94
                           22
                           360.0
     

     






      

          
GC ORFID: 47439How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2718Glimmer Score: 

          
Start: 2445101Stop: 2445589

          
Length: 489


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2718 translation of PA2718Homolog Bit Score 311.0

          
Other Homologs:  t_PA2718 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAATCGGCGAACTGGCCAAGCTCACCGGCCTGGCGACATCGCGCATCCGCTTCTACGAGGCCAGCGGC 
CTGATCCGCTCGCAGCGCAAGGCCAACGGCTACCGCGACTATGCGGCAGACACCGTGTGGATCCTGGAGCTG 
GTCACCGGCGCCCAGGGCGCCGGCTTCTCCCTGGAGGAGATCGCTCGCCTGCTGCCGAGCGGCGACGGCGCC 
TGGCAGCACGGCGAGCTGCTCGAAGGCTTGCGCCGCAAGGTGGCCGAGATCGAGGCCCTGCAACGACGCCTG 
GAACAGAACAAGGCACAATTGCTGGTGGCCATCGAAAGCATCGAGAACAAGCCGGACGGCCTGCAGTGCACG 
GAAAACACCCAGCGCGTGCTGGAGCGCCTGCGCGAGGAAGGCCCTCCCCAGACGGTCGGGCGTCCACGGCAA 
ACCCGCTCGCGGGGGTCCTCTCCCACGCCGGCGGAGCAGCGGCTTTCCGACGCTTGA