ViewGene

Locus Name:
GeneID:
Location:

GeneID:4436
TrivialName: PA14_40180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40180
PAO1 Ortholog Locus:PA1881
Sequence Length:462
Protein Length:153
Start: 3579807
Stop: 3580268
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05270.1|AE004614_4 (AE004614) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 153/153 (100%), Positives = 153/153 (100%)
Sequence:
ATGCCCACCTCGCTCGTCCTGAACGGCAAGAACGTCACCCTCGACGTCGATCCCAACATGCCCCTgctctgG
GccatccgGGAAAGCGCCGGCctGCACGGCACCAAGTTCGGCTGCGGCATGGCCCAGTGCGGCGCctGCAcC
GTGCAGctgGACGGCACCGCGGTACGTTCCTGCGTGCTGCCGGTCTCCGCGGTCGCCGGCAAGCGCGTCACC
ACCATCGAGGGTATCCAGAGCAAGCCCGGCAAGGCCGTGCAGGACGCCTGGGTCAAGCTCCAGGTACCGCAG
TGCGGCTACTGCCAGTCCGGCCAGATCATGTCCGCCACCGCGCTGCTGGAGCAGAACGCCAGCCCCAGCGAC
GCCGACATCGATGCCGCGATGAACGGCAACATCTGCCGCTGCGCCGCCTATGTGCGGATCCGCGCCGCCATC
CACGAAGCCGCCGACACCCTGAAGGCCTGA
Translation:
MPTSLVLNGKNVTLDVDPNMPLLWAIRESAGLHGTKFGCGMAQCGACTVQLDGTAVRSCVLPVSAVAGKRVT
TIEGIQSKPGKAVQDAWVKLQVPQCGYCQSGQIMSATALLEQNASPSDADIDAAMNGNICRCAAYVRIRAAI
HEAADTLKA*
AnnotationID:4442GeneID:4436
AnnotatorUID: diggins
Modification Date/Time: 2005-06-03 08:08:21
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase subunit
Cell Localization:()
Synonyms:PA1881
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2080
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD14156.1| (AL646060) PROBABLE ALDEHYDE DEHYDROGENASE (SUBUNIT III)
           OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
          Length = 152

 Score =  202 bits (514), Expect = 5e-52
 Identities = 97/149 (65%), Positives = 117/149 (78%), Gaps = 1/149 (0%)

>emb|CAE32912.1| (BX640444) putative oxidoreductase subunit [Bordetella
           bronchiseptica]
          Length = 152

 Score =  202 bits (513), Expect = 7e-52
 Identities = 99/152 (65%), Positives = 116/152 (76%), Gaps = 2/152 (1%)

>emb|CAD17475.1| (AL646078) PROBABLE DEHYDROGENASE, SMALL CHAIN OXIDOREDUCTASE
           PROTEIN [Ralstonia solanacearum]
          Length = 152

 Score =  194 bits (492), Expect = 2e-49
 Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 1/149 (0%)
Structural Features:
COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, 
small subunit CoxS/CutS homologs 
[Energy production and conversion]
CD-Length = 156 residues,  99.4% aligned
Score =  215 bits (549), Expect = 2e-57
Identities = 81/155 (52%), Positives = 104/155 (67%), Gaps = 2/155 (1%)
Genomic Context:
Comment:
ReferenceID:8873
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26016
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37065
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4436_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4436

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6777 PA1881_tr translation of PA1881 153 99.99 99.99 0 797.0
181409 gb|AAG05270.1|AE004614_4 (AE004614) probable oxidoreductase [Pseudomonas aeruginosa PAO1] 153 99.99 99.99 0 797.0
181411 emb|CAE32912.1| (BX640444) putative oxidoreductase subunit [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 154 64.28 75.32 3 516.0
181412 emb|CAE42405.1| (BX640417) putative oxidoreductase subunit [Bordetella pertussis] [Bordetella pertussis Tohama I] 154 64.28 75.32 3 516.0
181410 emb|CAD14156.1| (AL646060) PROBABLE ALDEHYDE DEHYDROGENASE (SUBUNIT III) OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum] 154 62.98 75.97 3 512.0
GC ORFID: 47438How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1881Glimmer Score:
Start: 1374103Stop: 1373642
Length: 462
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1881 translation of PA1881Homolog Bit Score 311.0
Other Homologs: t_PA2379 (ORF: BLASTX 184.0), psyr_15may02_Scaffold4_revised_gene5392 (ORF: BLASTX 115.0), t_PA1881 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCACCTCGCTCGTCCTGAACGGCAAGAACGTCACCCTCGACGTCGATCCCAACATGCCCCTgctctgG
GccatccgGGAAAGCGCCGGCctGCACGGCACCAAGTTCGGCTGCGGCATGGCCCAGTGCGGCGCctGCAcC
GTGCAGctgGACGGCACCGCGGTACGTTCCTGCGTGCTGCCGGTCTCCGCGGTCGCCGGCAAGCGCGTCACC
ACCATCGAGGGTATCCAGAGCAAGCCCGGCAAGGCCGTGCAGGACGCCTGGGTCAAGCTCCAGGTACCGCAG
TGCGGCTACTGCCAGTCCGGCCAGATCATGTCCGCCACCGCGCTGCTGGAGCAGAACGCCAGCCCCAGCGAC
GCCGACATCGATGCCGCGATGAACGGCAACATCTGCCGCTGCGCCGCCTATGTGCGGATCCGCGCCGCCATC
CACGAAGCCGCCGACACCCTGAAGGCCTGA