ViewGene
Locus Name:
GeneID:
Location:

GeneID:4433
TrivialName: PA14_04590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04590
PAO1 Ortholog Locus:PA0351
Sequence Length:474
Protein Length:157
Start: 408464
Stop: 407991
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03740.1|AE004473_2 (AE004473) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/157 (100%), Positives = 157/157 (100%)
Sequence:
ATGCCCCAGTCCCGCCGCCCGTTGCGCATCGGCCTGATCGCCGACACCCATGGCCTGCTTCGGCCCGAGGCG
CTGGAACGGTTGCGCGGCTGCGACCAGTTGATCCATGCCGGCGACATCGGCAAGCCGGAAATCCTCGCCGAG
CTGGAACGCCTGGCGCCGCTCTCGGTGGTGCGCGGCAACAACGACACCCAGGACTGGGCGGCGGACATCCCC
GAGCGCCTGCTGCTGAAGATCGGCCGGCTGACCCTCTACGTACTGCACGACCTCAAGCGACTCGACCTCGAC
CCGGCCGCCGAAGGCATCGACGTGGTGGTCGCCGGACATTCGCACAAGCCGCTGAAGGAAGAGCGCGACGGC
GTGCTCTACCTCAACCCGGGCAGCGCCGGGCCTCGGCGCTTCAGCTTGCCGATCGGGATCGGCGTGCTGGAA
GTGGCGGGGAAGAAGATCGAGGCGGAGCTGATCACCCTCTGA
Translation:
MPQSRRPLRIGLIADTHGLLRPEALERLRGCDQLIHAGDIGKPEILAELERLAPLSVVRGNNDTQDWAADIP
ERLLLKIGRLTLYVLHDLKRLDLDPAAEGIDVVVAGHSHKPLKEERDGVLYLNPGSAGPRRFSLPIGIGVLE
VAGKKIEAELITL*
AnnotationID:4439GeneID:4433
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 18:06:47
Gene Name:
Confidence Code:3
GeneProduct:putative phosphoesterase
Cell Localization:()
Synonyms:PA0351
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0622
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56114.1| (AE016865) phosphoesterase, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 152

 Score =  142 bits (358), Expect = 7e-34
 Identities = 73/153 (47%), Positives = 102/153 (66%), Gaps = 6/153 (3%)








 
Structural Features:
COG0622, Predicted phosphoesterase
CD-Length = 172 residues,  95.3% aligned
Score =  127 bits (319), Expect = 7e-31
Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 14/164 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8867




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26010




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33688




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4433_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4433
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6774
                           PA0351_tr
                           translation of PA0351
                           157
                           99.99
                           99.99
                           0
                           800.0
     

     
     
181392
                           gb|AAG03740.1|AE004473_2
                           (AE004473) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           157
                           99.99
                           99.99
                           0
                           800.0
     

     
     
181393
                           gb|AAM35049.1|
                           (AE011640) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           167
                           50.29
                           62.87
                           13
                           406.0
     

     
     
181394
                           gb|AAM39459.1|
                           (AE012110) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           173
                           49.13
                           60.11
                           22
                           402.0
     

     
     
181395
                           gb|AAO56114.1|
                           (AE016865) phosphoesterase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           162
                           45.06
                           62.96
                           15
                           365.0
     

     






      

          
GC ORFID: 47435How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0351Glimmer Score: 

          
Start: 6209806Stop: 6209333

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0351 translation of PA0351Homolog Bit Score 312.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene6979 (ORF: BLASTX 144.0), t_PA0351 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCAGTCCCGCCGCCCGTTGCGCATCGGCCTGATCGCCGACACCCATGGCCTGCTTCGGCCCGAGGCG 
CTGGAACGGTTGCGCGGCTGCGACCAGTTGATCCATGCCGGCGACATCGGCAAGCCGGAAATCCTCGCCGAG 
CTGGAACGCCTGGCGCCGCTCTCGGTGGTGCGCGGCAACAACGACACCCAGGACTGGGCGGCGGACATCCCC 
GAGCGCCTGCTGCTGAAGATCGGCCGGCTGACCCTCTACGTACTGCACGACCTCAAGCGACTCGACCTCGAC 
CCGGCCGCCGAAGGCATCGACGTGGTGGTCGCCGGACATTCGCACAAGCCGCTGAAGGAAGAGCGCGACGGC 
GTGCTCTACCTCAACCCGGGCAGCGCCGGGCCTCGGCGCTTCAGCTTGCCGATCGGGATCGGCGTGCTGGAA 
GTGGCGGGGAAGAAGATCGAGGCGGAGCTGATCACCCTCTGA