ViewGene
Locus Name:
GeneID:
Location:

GeneID:4432
TrivialName: PA14_69270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69270
PAO1 Ortholog Locus:PA5246
Sequence Length:474
Protein Length:157
Start: 6179603
Stop: 6180076
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08631.1|AE004937_3 (AE004937) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/157 (100%), Positives = 157/157 (100%)
Sequence:
ATGAGCGAAACGCCCTCCCCCGCCCTGCCTGACGACGTCCACCAACTGGTGGCGGATTTCTTCCAGCGCATC
CCCTTCAACCGCATGCTCGGGATCCGCGTGGCGAGCCTGGGCCGCGAGCGGGTAGTCCTCGACCTGCCGATG
AAGGACGAACTGATCGGCAACTTCGTCCAGGGCATTCTCCACGGCGGGGTGATCTCCAGCCTGCTCGACGTC
ACCGGCGGTGCGATGGCGCTGATCGGCGCCCTCGAACGGCATCGCGAACTGCCAGGCCACGAGCGCATGGCG
CGGCTGTCGAAGCTCGGCACCATCGACTTGCGCGTCGACTACCTGCGCCCGGGACGCGGCCGGACGTTCACC
GCCCATGCGGTGCCGCTTCGCTCGGGCAACAAGGTCGCAGTGGTGCGCTCGGAACTGCATAGCGACGACGGC
ACGCTGGTCGCCGTCGGTACCGGTACCTATCTGTGCGGCTGA
Translation:
MSETPSPALPDDVHQLVADFFQRIPFNRMLGIRVASLGRERVVLDLPMKDELIGNFVQGILHGGVISSLLDV
TGGAMALIGALERHRELPGHERMARLSKLGTIDLRVDYLRPGRGRTFTAHAVPLRSGNKVAVVRSELHSDDG
TLVAVGTGTYLCG*
AnnotationID:4438GeneID:4432
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 07:07:43
Gene Name:
Confidence Code:3
GeneProduct:putative thioesterase
Cell Localization:()
Synonyms:PA5246
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2050
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2050, PaaI, Uncharacterized protein, possibly involved in 
aromatic compounds catabolism 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 141 residues,  92.9% aligned
Score = 89.3 bits (221), Expect = 2e-19







   
Genomic Context:






   
Comment:


















    ReferenceID:8865




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26008




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34836




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4432_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4432
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6773
                           PA5246_tr
                           translation of PA5246
                           157
                           99.99
                           99.99
                           0
                           800.0
     

     
     
181375
                           gb|AAG08631.1|AE004937_3
                           (AE004937) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           157
                           99.99
                           99.99
                           0
                           800.0
     

     
     
181386
                           gb|AAO70869.1|
                           (AE016845) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           160
                           45.62
                           59.37
                           8
                           318.0
     

     
     
181387
                           emb|CAD07936.1|
                           (AL627278) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
                           160
                           45.62
                           59.37
                           8
                           318.0
     

     
     
181388
                           gb|AAF33436.1|
                           (AF233324) S. typhimurium hypothetical protein (YIGI) (SP:P40725) [Salmonella typhimurium LT2]
                           160
                           45.62
                           59.37
                           8
                           318.0
     

     






      

          
GC ORFID: 47434How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5246Glimmer Score: 

          
Start: 5443290Stop: 5443763

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5246 translation of PA5246Homolog Bit Score 312.0

          
Other Homologs:  t_PA5246 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAAACGCCCTCCCCCGCCCTGCCTGACGACGTCCACCAACTGGTGGCGGATTTCTTCCAGCGCATC 
CCCTTCAACCGCATGCTCGGGATCCGCGTGGCGAGCCTGGGCCGCGAGCGGGTAGTCCTCGACCTGCCGATG 
AAGGACGAACTGATCGGCAACTTCGTCCAGGGCATTCTCCACGGCGGGGTGATCTCCAGCCTGCTCGACGTC 
ACCGGCGGTGCGATGGCGCTGATCGGCGCCCTCGAACGGCATCGCGAACTGCCAGGCCACGAGCGCATGGCG 
CGGCTGTCGAAGCTCGGCACCATCGACTTGCGCGTCGACTACCTGCGCCCGGGACGCGGCCGGACGTTCACC 
GCCCATGCGGTGCCGCTTCGCTCGGGCAACAAGGTCGCAGTGGTGCGCTCGGAACTGCATAGCGACGACGGC 
ACGCTGGTCGCCGTCGGTACCGGTACCTATCTGTGCGGCTGA