ViewGene
Locus Name:
GeneID:
Location:

GeneID:4430
TrivialName: PA14_12050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12050
PAO1 Ortholog Locus:PA4004
Sequence Length:468
Protein Length:155
Start: 1040434
Stop: 1040901
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07391.1|AE004817_15 (AE004817) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/155 (99%), Positives = 154/155 (99%)
Sequence:
ATGCGGTTGCGCCTGATCGCGGTTGGCTCGCGCATGCCTCGCTGGGTCGAGGAAGGCTGGCAGGAATACGTC
AAGCGCCTGCCGGCCGAGCTGTCCCTCGAACTGGTGGAGATCCCGCTCAACACCCGCGGCAAGAACGCCGAC
GTGGCGCGCCTGATCCGTCAGGAAGGCGAGGCCATGCTGGCGCGCGTGCAGCCGGGGGAACGGGTGGTGACC
CTGGAGGTCGAAGGTCGGCTCTGGAGCACCGAGCAACTGGCTCGCGAACTGGATCGCTGGCGTCTCGACGCA
CGCACCGTGAATCTCATGGTCGGCGGCCCGGAAGGGCTGGCGCCGGAGGTCTGCGCGCGCAGCGAGCAGCGC
TGGTCGCTGTCGCCGTTGACGCTGCCGCACCCGTTGGTGCGGATCCTGGTCGGCGAGCAGATCTACCGGGCC
TGGACCGTATTGTCCGGGCACCCCTACCACAAATAG
Translation:
MRLRLIAVGSRMPRWVEEGWQEYVKRLPAELSLELVEIPLNTRGKNADVARLIRQEGEAMLARVQPGERVVT
LEVEGRLWSTEQLARELDRWRLDARTVNLMVGGPEGLAPEVCARSEQRWSLSPLTLPHPLVRILVGEQIYRA
WTVLSGHPYHK*
AnnotationID:4436GeneID:4430
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 11:11:43
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4004
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1576,pfam02590
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAG07391.1|AE004817_15 (AE004817) conserved hypothetical protein
[Pseudomonas aeruginosa PAO1]
Length = 155
Score =  312 bits (800), Expect = 4e-85
Identities = 154/155 (99%), Positives = 154/155 (99%)






 
Structural Features:
gnl|CDD|11289 COG1576, COG1576, Uncharacterized conserved protein [Function unknown]
Length = 155
Score =  220 bits (563), Expect = 1e-58
Identities = 76/155 (49%), Positives = 112/155 (72%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8861




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26004




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4430
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6771
                           PA4004_tr
                           translation of PA4004
                           155
                           99.35
                           99.35
                           0
                           800.0
     

     
     
181338
                           gb|AAG07391.1|AE004817_15
                           (AE004817) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           155
                           99.35
                           99.35
                           0
                           800.0
     

     
     
181340
                           gb|AAO58255.1|
                           (AE016873) conserved hypothetical protein TIGR00246 [Pseudomonas syringae pv. tomato str. DC3000]
                           155
                           90.32
                           96.77
                           0
                           754.0
     

     
     
181339
                           gb|AAN70377.1|AE016679_9
                           (AE016792) conserved hypothetical protein TIGR00246 [Pseudomonas putida KT2440]
                           172
                           82.55
                           87.20
                           17
                           759.0
     

     
     
181342
                           dbj|BAC58986.1|
                           (AP005075) conserved hypothetical protein [Vibrio parahaemolyticus]
                           156
                           57.69
                           80.12
                           1
                           524.0
     

     






      

          
GC ORFID: 47432How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4004Glimmer Score: 

          
Start: 3913504Stop: 3913037

          
Length: 468


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4004 translation of PA4004Homolog Bit Score 312.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5325 (ORF: BLASTX 293.0), t_PA4004 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGTTGCGCCTGATCGCGGTTGGCTCGCGCATGCCTCGCTGGGTCGAGGAAGGCTGGCAGGAATACGTC 
AAGCGCCTGCCGGCCGAGCTGTCCCTCGAACTGGTGGAGATCCCGCTCAACACCCGCGGCAAGAACGCCGAC 
GTGGCGCGCCTGATCCGTCAGGAAGGCGAGGCCATGCTGGCGCGCGTGCAGCCGGGGGAACGGGTGGTGACC 
CTGGAGGTCGAAGGTCGGCTCTGGAGCACCGAGCAACTGGCTCGCGAACTGGATCGCTGGCGTCTCGACGCA 
CGCACCGTGAATCTCATGGTCGGCGGCCCGGAAGGGCTGGCGCCGGAGGTCTGCGCGCGCAGCGAGCAGCGC 
TGGTCGCTGTCGCCGTTGACGCTGCCGCACCCGTTGGTGCGGATCCTGGTCGGCGAGCAGATCTACCGGGCC 
TGGACCGTATTGTCCGGGCACCCCTACCACAAATAG