ViewGene
Locus Name:
GeneID:
Location:

GeneID:4429
TrivialName: PA14_55100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55100
PAO1 Ortholog Locus:PA0714
Sequence Length:477
Protein Length:158
Start: 4895700
Stop: 4895224
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04103.1|AE004507_2 (AE004507) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/158 (97%), Positives = 154/158 (97%)
Sequence:
GTGTTGAAGTTATTGGTCGTGGTTGCTTTCCTGTTCATTGGCGGAGGCATGGCCATGGGAGAGCCTGGGGGG
GCGGATGGGTTTTCCGCTGTCGCAGCGGTCGATCCGGGAGCGAACCCCGAAGCGCAACTGGACGGGGAGCCT
CAGGAGGTCAGCGAAGCGCCGGCCTATCGCGTGGATGACCTCACCTTCCTGTACCTCACCCATGAGGTCTAT
CTGGAACCCTACGTTTCCTGCCGTCCGAAAGTCCTGGGCGAACGTTCGTACGTTGCCTGCTGGAACGAAACC
TATTCCGGCCGCTCCCCGCTGAACTTCTGGGAATACGACGAGGGTGACTTCCTCGCCCTCAACGACCCGGCA
CGTGTGTTGGCCGAGGGGAAGTTCGCCAGCGAGCAGCACATCGGCGAAGCGCCCCTGCCGCTGCCTCTGGAT
ATCGATCTGGACCAGTTGGAGCGGGCCTACTCGCTGATGATGTAA
Translation:
MLKLLVVVAFLFIGGGMAMGEPGGADGFSAVAAVDPGANPEAQLDGEPQEVSEAPAYRVDDLTFLYLTHEVY
LEPYVSCRPKVLGERSYVACWNETYSGRSPLNFWEYDEGDFLALNDPARVLAEGKFASEQHIGEAPLPLPLD
IDLDQLERAYSLMM*
AnnotationID:4435GeneID:4429
AnnotatorUID: danlee
Modification Date/Time: 2004-03-17 13:01:15
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0714
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15084




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26002




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4429
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6770
                           PA0714_tr
                           translation of PA0714
                           158
                           97.46
                           97.46
                           0
                           800.0
     

     
     
181337
                           gb|AAG04103.1|AE004507_2
                           (AE004507) hypothetical protein PA0714 [Pseudomonas aeruginosa PAO1]
                           158
                           96.83
                           97.46
                           0
                           797.0
     

     






      

          
GC ORFID: 47431How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0714Glimmer Score: 

          
Start: 58207Stop: 58683

          
Length: 477


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0714 translation of PA0714Homolog Bit Score 312.0

          
Other Homologs:  t_PA0714 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTTGAAGTTATTGGTCGTGGTTGCTTTCCTGTTCATTGGCGGAGGCATGGCCATGGGAGAGCCTGGGGGG 
GCGGATGGGTTTTCCGCTGTCGCAGCGGTCGATCCGGGAGCGAACCCCGAAGCGCAACTGGACGGGGAGCCT 
CAGGAGGTCAGCGAAGCGCCGGCCTATCGCGTGGATGACCTCACCTTCCTGTACCTCACCCATGAGGTCTAT 
CTGGAACCCTACGTTTCCTGCCGTCCGAAAGTCCTGGGCGAACGTTCGTACGTTGCCTGCTGGAACGAAACC 
TATTCCGGCCGCTCCCCGCTGAACTTCTGGGAATACGACGAGGGTGACTTCCTCGCCCTCAACGACCCGGCA 
CGTGTGTTGGCCGAGGGGAAGTTCGCCAGCGAGCAGCACATCGGCGAAGCGCCCCTGCCGCTGCCTCTGGAT 
ATCGATCTGGACCAGTTGGAGCGGGCCTACTCGCTGATGATGTAA