ViewGene

Locus Name:
GeneID:
Location:

GeneID:4428
TrivialName: PA14_04330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04330
PAO1 Ortholog Locus:PA0332
Sequence Length:468
Protein Length:155
Start: 387894
Stop: 388361
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03721.1|AE004471_4 (AE004471) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/155 (99%), Positives = 155/155 (100%)
Sequence:
ATGGAACATTTTCTCCAGATCAAGATTCTCCACGGAGTCGCCACCGTGCTGCTCTTCGGCGGCCTGCTCGGC
CTGGCGTTCTACGCCTGGCGCAGCTGGCGGACGGGCGACGCGGCGCGGATCGCGCGCGGTTTCAAGCGGGTC
CGCCTGATCGGCTGGCCGCTGCTGGGGCTCAGCCTGCTGGCCCTGCCGGTCAGCGGCTGGTGGCTGGTGCAC
CTGGCCGGCTGGCCGTTGGGCCAGAGCTGGCTGCTGTTCGGCGCCTGCCTCTATCTGCTCGGCTGCATCTTC
TGGCTGGTCCTCGCCGGCCGCCTGGCGCGGGTCCAGCACCAGGCCGGCGCCGCCGAGACGGCGGGGGCCGCG
CTGGGCGAGCAGACCCTGCGCGAGATCAAGGTGGGCCTGGTCATGGCCCTGCTCGGTGCGGCCAGCTTCATC
GCGGTGGCGGTACTGATGGTCAGCAAGCCGCTCTGA
Translation:
MEHFLQIKILHGVATVLLFGGLLGLAFYAWRSWRTGDAARIARGFKRVRLIGWPLLGLSLLALPVSGWWLVH
LAGWPLGQSWLLFGACLYLLGCIFWLVLAGRLARVQHQAGAAETAGAALGEQTLREIKVGLVMALLGAASFI
AVAVLMVSKPL*
AnnotationID:4434GeneID:4428
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 14:02:07
Gene Name:
Confidence Code:3
GeneProduct:putative integral membrane protein
Cell Localization:()
Synonyms:PA0332
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5528
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG5528,Predicted integral membrane protein
CD-Length = 155 residues,  99.4% aligned
Score =  181 bits (461), Expect = 3e-47
Identities = 84/154 (54%), Positives = 104/154 (67%)
Genomic Context:
Comment:
ReferenceID:8857
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26000
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33667
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4428_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4428

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6769 PA0332_tr translation of PA0332 155 99.35 99.99 0 802.0
181336 gb|AAG03721.1|AE004471_4 (AE004471) hypothetical protein PA0332 [Pseudomonas aeruginosa PAO1] 155 99.35 99.99 0 802.0
GC ORFID: 47430How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0332Glimmer Score:
Start: 6189236Stop: 6189703
Length: 468
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0332 translation of PA0332Homolog Bit Score 313.0
Other Homologs: t_PA0332 (ORF: GLIMMER)
GC ORF Sequence
ATGGAACATTTTCTCCAGATCAAGATTCTCCACGGAGTCGCCACCGTGCTGCTCTTCGGCGGCCTGCTCGGC
CTGGCGTTCTACGCCTGGCGCAGCTGGCGGACGGGCGACGCGGCGCGGATCGCGCGCGGTTTCAAGCGGGTC
CGCCTGATCGGCTGGCCGCTGCTGGGGCTCAGCCTGCTGGCCCTGCCGGTCAGCGGCTGGTGGCTGGTGCAC
CTGGCCGGCTGGCCGTTGGGCCAGAGCTGGCTGCTGTTCGGCGCCTGCCTCTATCTGCTCGGCTGCATCTTC
TGGCTGGTCCTCGCCGGCCGCCTGGCGCGGGTCCAGCACCAGGCCGGCGCCGCCGAGACGGCGGGGGCCGCG
CTGGGCGAGCAGACCCTGCGCGAGATCAAGGTGGGCCTGGTCATGGCCCTGCTCGGTGCGGCCAGCTTCATC
GCGGTGGCGGTACTGATGGTCAGCAAGCCGCTCTGA