ViewGene

Locus Name:
GeneID:
Location:

GeneID:4426
TrivialName: PA14_20070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20070
PAO1 Ortholog Locus:PA3403
Sequence Length:486
Protein Length:161
Start: 1730458
Stop: 1730943
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06791.1|AE004761_7 (AE004761) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 161/161 (100%), Positives = 161/161 (100%)
Sequence:
ATGAAACAGAATTGGGCCGAGCGCCTGCGCGCAAGCATGCACCACCAGGCGGAGAGCCTCGGCAACCTGCTG
GTGGAGGCGTTCCACTACCTGGCCCTGTTCGCCATCGGCGCCACGGTGTTCTGGGCGGCGGGCGCGGCCTTC
CTGGGGATGGTGAACAAGGGGCATGCGTCGATCGACGACATCCTCCTGCTGTTCATCTACCTCGAGCTGGGC
GCGATGGTCGGTATCTACTTCAAGACCAACCACATGCCGGTACGCTTCCTGATCTACGTGGCGATGACCGCG
CTGACCCGCCTGATGATCGCCGACATCCAGCACAACCATACGCCGGACGATGGCATCATCCTGGTCTCGGTG
GCGTTGCTCCTGCTGGCGCTGGCGATCTTGGTGGTGCGCTTCGCCTCGGCGCGCTTCCCTTCGGCGAAGTCC
GACGGCGCCGCCGCGCGGCGGGTGGCGAGCGAGGACGCCGAAGGGGAAGCCTGA
Translation:
MKQNWAERLRASMHHQAESLGNLLVEAFHYLALFAIGATVFWAAGAAFLGMVNKGHASIDDILLLFIYLELG
AMVGIYFKTNHMPVRFLIYVAMTALTRLMIADIQHNHTPDDGIILVSVALLLLALAILVVRFASARFPSAKS
DGAAARRVASEDAEGEA*
AnnotationID:4432GeneID:4426
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 11:11:14
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3403
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3223
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3223, Predicted membrane protein
CD-Length = 138 residues, 100.0% aligned
Score =  148 bits (375), Expect = 3e-37
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Genomic Context:
Comment:
ReferenceID:8853
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25996
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32161
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4426_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4426

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6767 PA3403_tr translation of PA3403 161 99.99 99.99 0 803.0
181234 gb|AAG06791.1|AE004761_7 (AE004761) hypothetical protein PA3403 [Pseudomonas aeruginosa PAO1] 161 99.99 99.99 0 803.0
181235 gb|AAO54727.1| (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 162 62.34 79.01 1 512.0
181236 gb|AAN70188.1|AE016658_5 (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440] 166 58.43 71.08 15 486.0
181237 gb|AAK59982.1| (AF182512) unknown [Pseudomonas putida] 166 58.43 71.08 15 486.0
GC ORFID: 47428How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3403Glimmer Score:
Start: 3223474Stop: 3222989
Length: 486
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3403 translation of PA3403Homolog Bit Score 313.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4357 (ORF: BLASTX 200.0), t_PA3403 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACAGAATTGGGCCGAGCGCCTGCGCGCAAGCATGCACCACCAGGCGGAGAGCCTCGGCAACCTGCTG
GTGGAGGCGTTCCACTACCTGGCCCTGTTCGCCATCGGCGCCACGGTGTTCTGGGCGGCGGGCGCGGCCTTC
CTGGGGATGGTGAACAAGGGGCATGCGTCGATCGACGACATCCTCCTGCTGTTCATCTACCTCGAGCTGGGC
GCGATGGTCGGTATCTACTTCAAGACCAACCACATGCCGGTACGCTTCCTGATCTACGTGGCGATGACCGCG
CTGACCCGCCTGATGATCGCCGACATCCAGCACAACCATACGCCGGACGATGGCATCATCCTGGTCTCGGTG
GCGTTGCTCCTGCTGGCGCTGGCGATCTTGGTGGTGCGCTTCGCCTCGGCGCGCTTCCCTTCGGCGAAGTCC
GACGGCGCCGCCGCGCGGCGGGTGGCGAGCGAGGACGCCGAAGGGGAAGCCTGA