ViewGene
Locus Name:
GeneID:
Location:

GeneID:4424
TrivialName: PA14_39090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39090
PAO1 Ortholog Locus:PA1967
Sequence Length:501
Protein Length:166
Start: 3483838
Stop: 3484338
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05355.1|AE004623_5 (AE004623) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/166 (94%), Positives = 160/166 (96%)
Sequence:
ATGAACAGCATCGGTCCCGCCAGCCTTTCCGGCTGGTCTGCGCGTTACCCGAACAACCAGCGGCAAGCCAGC
ACCGAGATCGGCAACGGCGATCTGCTGAAACCGCGCCCCGCCCTCGGCACGCCATTGCGCAACGAGGCCGCC
GATCCCGCCACGGAGTCCGCCCGCCAGGCCCTGGACGAGGGTTTCGCGAAGCTGAACCTGACGCTGAAGCAG
AACCAGGCGAATGCCACTGCCGGCGCCAGCGAAGGCAAGTCGGCCTATGACGAGTTCAAGGAGTACATGCAG
AAATCGCCCGCCGAGCGGATGCGCGAGCAGGTCCTGAAGAGCCTCGGCCTGACCGAGGAGGAACTGGACGCG
ATGCCGCCGGAGAAACGCGAACAGGTGGAGAAAGGCATCGGCGAACGCATGCGCGAGATGATCGCCATGCAG
AACGGCCAGGCGCCGGGACGGCAAGAGGACCCGACGCAGGCCGGCGCGACGCTGAACGCCTGGATCTGA
Translation:
MNSIGPASLSGWSARYPNNQRQASTEIGNGDLLKPRPALGTPLRNEAADPATESARQALDEGFAKLNLTLKQ
NQANATAGASEGKSAYDEFKEYMQKSPAERMREQVLKSLGLTEEELDAMPPEKREQVEKGIGERMREMIAMQ
NGQAPGRQEDPTQAGATLNAWI*
AnnotationID:4430GeneID:4424
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 15:03:22
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1967
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8849




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25992




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4424
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6765
                           PA1967_tr
                           translation of PA1967
                           166
                           94.57
                           96.38
                           0
                           801.0
     

     
     
181232
                           gb|AAG05355.1|AE004623_5
                           (AE004623) hypothetical protein PA1967 [Pseudomonas aeruginosa PAO1]
                           166
                           94.57
                           96.38
                           0
                           801.0
     

     






      

          
GC ORFID: 47426How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1967Glimmer Score: 

          
Start: 1470073Stop: 1469573

          
Length: 501


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1967 translation of PA1967Homolog Bit Score 313.0

          
Other Homologs:  t_PA1967 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAGCATCGGTCCCGCCAGCCTTTCCGGCTGGTCTGCGCGTTACCCGAACAACCAGCGGCAAGCCAGC 
ACCGAGATCGGCAACGGCGATCTGCTGAAACCGCGCCCCGCCCTCGGCACGCCATTGCGCAACGAGGCCGCC 
GATCCCGCCACGGAGTCCGCCCGCCAGGCCCTGGACGAGGGTTTCGCGAAGCTGAACCTGACGCTGAAGCAG 
AACCAGGCGAATGCCACTGCCGGCGCCAGCGAAGGCAAGTCGGCCTATGACGAGTTCAAGGAGTACATGCAG 
AAATCGCCCGCCGAGCGGATGCGCGAGCAGGTCCTGAAGAGCCTCGGCCTGACCGAGGAGGAACTGGACGCG 
ATGCCGCCGGAGAAACGCGAACAGGTGGAGAAAGGCATCGGCGAACGCATGCGCGAGATGATCGCCATGCAG 
AACGGCCAGGCGCCGGGACGGCAAGAGGACCCGACGCAGGCCGGCGCGACGCTGAACGCCTGGATCTGA