ViewGene
Locus Name:
GeneID:
Location:

GeneID:4423
TrivialName: PA14_42860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42860
PAO1 Ortholog Locus:PA1673
Sequence Length:462
Protein Length:153
Start: 3809845
Stop: 3809384
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05062.1|AE004595_1 (AE004595) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 153/153 (100%), Positives = 153/153 (100%)
Sequence:
ATGGCGCATCTGGTCTGGCAGGATGACCTGAATACCGGTATTCAGGTCATCGACAATCAACACAAACGCATC
GTCGAGATGATCAATCACCTGCACGACGCCCAGCAAGGCAAGGAACACGCGGCGATCGCCGAGGTGATCGAG
GAGCTGGTGGACTACACGCTGTCGCACTTCGCCTTCGAGGAAACCCTGATGGAGGATGCCGGCTACCAGTTT
TCCCGGGCGCACAAGAAGATCCACGAGCTGTTCATCCGCCGGGTCTCCGAATACCGGGTGCGCTTCCAGGCC
GGCGAGGATGTCGGCGACGAACTCAAGGGCTTGCTCTCGCGCTGGCTGTTCAACCACATCCGCAACGACGAC
GCCGGTTACGTGGATGCGGTACGCCACAGCATGTCCGAACTGGTCAAGGACAAGAGCGAGGGCGGTTGGTTG
TCGCGCTCGATGAAGCGCTTCTTCGGCTGA
Translation:
MAHLVWQDDLNTGIQVIDNQHKRIVEMINHLHDAQQGKEHAAIAEVIEELVDYTLSHFAFEETLMEDAGYQF
SRAHKKIHELFIRRVSEYRVRFQAGEDVGDELKGLLSRWLFNHIRNDDAGYVDAVRHSMSELVKDKSEGGWL
SRSMKRFFG*
AnnotationID:4429GeneID:4423
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 18:06:40
Gene Name:
Confidence Code:3
GeneProduct:putative hemerythrin
Cell Localization:()
Synonyms:PA1673
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2703,cd00522
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2703, COG2703, Hemerythrin [Inorganic ion transport and metabolism]
CD-Length = 144 residues, 100.0% aligned
Score =  137 bits (345), Expect = 8e-34
Identities = 55/144 (38%), Positives = 77/144 (53%), Gaps = 3/144 (2%)

cd00522, Hemerythrin
CD-Length = 113 residues, 100.0% aligned
Score =  123 bits (309), Expect = 1e-29
Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 12/125 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8847




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25990




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37161




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4423_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4423
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6764
                           PA1673_tr
                           translation of PA1673
                           153
                           99.99
                           99.99
                           0
                           803.0
     

     
     
181229
                           gb|AAG05062.1|AE004595_1
                           (AE004595) hypothetical protein PA1673 [Pseudomonas aeruginosa PAO1]
                           153
                           99.99
                           99.99
                           0
                           803.0
     

     
     
181230
                           gb|AAM37334.1|
                           (AE011885) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           153
                           62.74
                           77.77
                           0
                           527.0
     

     
     
181231
                           gb|AAM41629.1|
                           (AE012343) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           153
                           59.47
                           76.47
                           0
                           516.0
     

     






      

          
GC ORFID: 47425How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1673Glimmer Score: 

          
Start: 1144064Stop: 1144525

          
Length: 462


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1673 translation of PA1673Homolog Bit Score 313.0

          
Other Homologs:  t_PA1673 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGCATCTGGTCTGGCAGGATGACCTGAATACCGGTATTCAGGTCATCGACAATCAACACAAACGCATC 
GTCGAGATGATCAATCACCTGCACGACGCCCAGCAAGGCAAGGAACACGCGGCGATCGCCGAGGTGATCGAG 
GAGCTGGTGGACTACACGCTGTCGCACTTCGCCTTCGAGGAAACCCTGATGGAGGATGCCGGCTACCAGTTT 
TCCCGGGCGCACAAGAAGATCCACGAGCTGTTCATCCGCCGGGTCTCCGAATACCGGGTGCGCTTCCAGGCC 
GGCGAGGATGTCGGCGACGAACTCAAGGGCTTGCTCTCGCGCTGGCTGTTCAACCACATCCGCAACGACGAC 
GCCGGTTACGTGGATGCGGTACGCCACAGCATGTCCGAACTGGTCAAGGACAAGAGCGAGGGCGGTTGGTTG 
TCGCGCTCGATGAAGCGCTTCTTCGGCTGA