ViewGene
Locus Name:
GeneID:
Location:

GeneID:4422
TrivialName: PA14_71690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71690
PAO1 Ortholog Locus:PA5432
Sequence Length:450
Protein Length:149
Start: 6386825
Stop: 6387274
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08817.1|AE004956_1 (AE004956) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 148/149 (99%), Positives = 148/149 (99%)
Sequence:
ATGAGCACGTCCCTGCAGATTCGTCCCGTCGGCGCCGCCGACCACGCCGCCTGGCTGCCGCTGTGGGAGGGC
TACCAGCGCTTCTACAAGACCGAGATCGCCGCCGCTACCAGCGACGCCACCTGGCAGCGCTTCCTCGACGCC
GACGAACCGATGAACGCCGCCCTCGCCTGGCTCGACGAGCGCGCCGTGGGCCTGGTGCACTGGATCTACCAC
CGCTCCTGCTGGACCGTCGGCGACTACTGCTACCTGCAGGACCTGTTCGTCGCCGAGGGCCTGCGCGGCGAG
GGCATAGGGCGCCGGCTGATCGAGCATGTCTACGCCGAGGCCGGCGCCGCTGGCTGTTCGCGGGTGCACTGG
CTGACCCACGAGAGCAACAGCGACGCGATGAAGCTGTACGAGCGCATCGCCGACAAGTCCGGTTTCCTTCAG
TACCGCAGGATTCTCTGA
Translation:
MSTSLQIRPVGAADHAAWLPLWEGYQRFYKTEIAAATSDATWQRFLDADEPMNAALAWLDERAVGLVHWIYH
RSCWTVGDYCYLQDLFVAEGLRGEGIGRRLIEHVYAEAGAAGCSRVHWLTHESNSDAMKLYERIADKSGFLQ
YRRIL*
AnnotationID:4428GeneID:4422
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 15:03:41
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase, GNAT family
Cell Localization:()
Synonyms:PA5432
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE30719.1| (BX640437) acetyltransferase (GNAT) family protein [Bordetella
           bronchiseptica]
          Length = 149

 Score =  228 bits (582), Expect = 6e-60
 Identities = 100/147 (68%), Positives = 121/147 (82%)

>emb|CAE39958.1| (BX640423) acetyltransferase (GNAT) family protein [Bordetella
           parapertussis]
          Length = 149

 Score =  228 bits (582), Expect = 6e-60
 Identities = 100/147 (68%), Positives = 121/147 (82%)

>gb|AAO58925.1| (AE016876) acetyltransferase, GNAT family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 148

 Score =  197 bits (500), Expect = 2e-50
 Identities = 87/147 (59%), Positives = 113/147 (76%)








 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues,  95.1% aligned
Score = 57.6 bits (139), Expect = 6e-10
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 3/81 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8845




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25988




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34669




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4422_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4422
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6762
                           PA5432_tr
                           translation of PA5432
                           149
                           99.32
                           99.32
                           0
                           804.0
     

     
     
181217
                           gb|AAG08817.1|AE004956_1
                           (AE004956) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
                           149
                           99.32
                           99.32
                           0
                           804.0
     

     
     
181218
                           emb|CAE30719.1|
                           (BX640437) acetyltransferase (GNAT) family protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           150
                           66.66
                           80.66
                           2
                           581.0
     

     
     
181219
                           emb|CAE39958.1|
                           (BX640423) acetyltransferase (GNAT) family protein [Bordetella parapertussis]
                           150
                           66.66
                           80.66
                           2
                           581.0
     

     
     
181221
                           emb|CAE27947.1|
                           (BX572601) possible acetyltransferase [Rhodopseudomonas palustris CGA009]
                           149
                           59.06
                           72.48
                           2
                           484.0
     

     






      

          
GC ORFID: 47424How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5432Glimmer Score: 

          
Start: 5650514Stop: 5650963

          
Length: 450


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5432 translation of PA5432Homolog Bit Score 314.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2913 (ORF: BLASTX 191.0), t_PA4166 (ORF: BLASTX 149.0), t_PA5432 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCACGTCCCTGCAGATTCGTCCCGTCGGCGCCGCCGACCACGCCGCCTGGCTGCCGCTGTGGGAGGGC 
TACCAGCGCTTCTACAAGACCGAGATCGCCGCCGCTACCAGCGACGCCACCTGGCAGCGCTTCCTCGACGCC 
GACGAACCGATGAACGCCGCCCTCGCCTGGCTCGACGAGCGCGCCGTGGGCCTGGTGCACTGGATCTACCAC 
CGCTCCTGCTGGACCGTCGGCGACTACTGCTACCTGCAGGACCTGTTCGTCGCCGAGGGCCTGCGCGGCGAG 
GGCATAGGGCGCCGGCTGATCGAGCATGTCTACGCCGAGGCCGGCGCCGCTGGCTGTTCGCGGGTGCACTGG 
CTGACCCACGAGAGCAACAGCGACGCGATGAAGCTGTACGAGCGCATCGCCGACAAGTCCGGTTTCCTTCAG 
TACCGCAGGATTCTCTGA