ViewGene
Locus Name:
GeneID:
Location:

GeneID:4421
TrivialName: PA14_09160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09160
PAO1 Ortholog Locus:PA4235
Sequence Length:465
Protein Length:154
Start: 774689
Stop: 775153
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07623.1|AE004841_1 (AE004841) bacterioferritin [Pseudomonas aeruginosa PAO1]
Identities = 154/154 (100%), Positives = 154/154 (100%)
Sequence:
ATGCAAGGCCATCCGGAAGTCATCGATTACCTCAACACGCTGCTGACCGGCGAGCTGGCCGCGCGCGACCAG
TACTTCATCCACTCGCGCATGTACGAGGACTGGGGCTTCAGCAAGCTCTACGAGCGCCTCAACCACGAGATG
GAGGAGGAGACCCAGCACGCCGACGCCCTGCTGCGCCGTATCCTCCTGCTCGAAGGTACGCCGCGCATGCGT
CCCGACGATATCCACCCGGGCACCACGGTGCCGGAGATGCTCGAGGCCGACCTCAAGCTCGAGCGCCATGTC
CGCGCCGCGCTGGCCAAGGGCATCGCCCTCTGCGAGCAGCACAAGGACTTCGTCAGCCGCGACATCCTCAAG
GCCCAGTTGGCCGACACCGAGGAAGACCACGCCTACTGGTTGGAGCAACAGCTTGGCCTGATCGCCAGGATG
GGCCTGGAGAACTACCTGCAGTCGCAGATCTGA
Translation:
MQGHPEVIDYLNTLLTGELAARDQYFIHSRMYEDWGFSKLYERLNHEMEEETQHADALLRRILLLEGTPRMR
PDDIHPGTTVPEMLEADLKLERHVRAALAKGIALCEQHKDFVSRDILKAQLADTEEDHAYWLEQQLGLIARM
GLENYLQSQI*
AnnotationID:4427GeneID:4421
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 12:12:27
Gene Name:bfrA
Confidence Code:1
GeneProduct:bacterioferritin
Cell Localization:()
Synonyms:bfr1
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2193,cd00907
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54195.1| (AE016858) bacterioferritin [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 154

 Score =  267 bits (682), Expect = 2e-71
 Identities = 126/153 (82%), Positives = 140/153 (91%)

>gb|AAB88220.1| (U66717) bacterioferritin [Pseudomonas putida]
          Length = 154

 Score =  255 bits (652), Expect = 5e-68
 Identities = 122/154 (79%), Positives = 137/154 (88%)

>gb|AAM36309.1| (AE011776) bacterioferritin [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 161

 Score =  223 bits (567), Expect = 4e-58
 Identities = 110/154 (71%), Positives = 124/154 (80%)






 
Structural Features:
COG2193, Bfr, Bacterioferritin (cytochrome b1) 
[Inorganic ion transport and metabolism]
CD-Length = 157 residues,  98.1% aligned
Score =  195 bits (497), Expect = 2e-51
Identities = 86/155 (55%), Positives = 107/155 (69%), Gaps = 2/155 (1%)

cd00907, Bacterioferritin
CD-Length = 153 residues, 100.0% aligned
Score =  189 bits (482), Expect = 1e-49







   
Genomic Context:






   
Comment:


















    ReferenceID:8843




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25986




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36911




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4421_cdd.html


    		




 
URL:

















    ReferenceID:37020




  
Author/Investigator(s):
        Ma JF, Ochsner UA, Klotz MG, Nanayakkara VK, Howell ML, Johnson Z, Posey JE, Vasil ML, Monaco JJ, Hassett DJ.





  
Title:
        Bacterioferritin A modulates catalase A (KatA) activity and resistance to hydrogen peroxide in Pseudomonas aeruginosa.




  
PubMed:
        10368148


MedLine:
        




    
Source:
J Bacteriol. 1999 Jun;181(12):3730-42.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10368148









           
Homologs By Global Alignment 

           

       



     
Gene ID:4421
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6760
                           PA4235_tr
                           translation of PA4235
                           154
                           99.99
                           99.99
                           0
                           805.0
     

     
     
181139
                           gb|AAG07623.1|AE004841_1
                           (AE004841) bacterioferritin [Pseudomonas aeruginosa PAO1]
                           154
                           99.99
                           99.99
                           0
                           805.0
     

     
     
181140
                           gb|AAO54195.1|
                           (AE016858) bacterioferritin [Pseudomonas syringae pv. tomato str. DC3000]
                           154
                           81.81
                           90.90
                           0
                           682.0
     

     
     
181141
                           gb|AAN66112.1|AE016239_7
                           (AE016775) bacterioferritin [Pseudomonas putida KT2440]
                           154
                           80.51
                           88.96
                           0
                           656.0
     

     
     
181142
                           gb|AAB88220.1|
                           (U66717) bacterioferritin [Pseudomonas putida]
                           154
                           79.22
                           88.96
                           0
                           652.0
     

     






      

          
GC ORFID: 47423How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4235Glimmer Score: 

          
Start: 4179249Stop: 4178785

          
Length: 465


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4235 translation of PA4235Homolog Bit Score 314.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5215 (ORF: BLASTX 264.0), t_PA3531 (ORF: BLASTX 135.0), psyr_15may02_Scaffold5_revised_gene6120 (ORF: BLASTX 120.0), t_PA4235 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGGCCATCCGGAAGTCATCGATTACCTCAACACGCTGCTGACCGGCGAGCTGGCCGCGCGCGACCAG 
TACTTCATCCACTCGCGCATGTACGAGGACTGGGGCTTCAGCAAGCTCTACGAGCGCCTCAACCACGAGATG 
GAGGAGGAGACCCAGCACGCCGACGCCCTGCTGCGCCGTATCCTCCTGCTCGAAGGTACGCCGCGCATGCGT 
CCCGACGATATCCACCCGGGCACCACGGTGCCGGAGATGCTCGAGGCCGACCTCAAGCTCGAGCGCCATGTC 
CGCGCCGCGCTGGCCAAGGGCATCGCCCTCTGCGAGCAGCACAAGGACTTCGTCAGCCGCGACATCCTCAAG 
GCCCAGTTGGCCGACACCGAGGAAGACCACGCCTACTGGTTGGAGCAACAGCTTGGCCTGATCGCCAGGATG 
GGCCTGGAGAACTACCTGCAGTCGCAGATCTGA