ViewGene

Locus Name:
GeneID:
Location:

GeneID:4419
TrivialName: PA14_35170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35170
PAO1 Ortholog Locus:PA2273
Sequence Length:471
Protein Length:156
Start: 3129053
Stop: 3129523
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05661.1|AE004653_4 (AE004653) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 156/156 (100%), Positives = 156/156 (100%)
Sequence:
ATGAAGAATTCCTGCGCATCCCGCGAACTGAGCGTCGGCGAACTGGCCAGGCGTGCCGGCGTGGCGGTCTCC
GCCCTGCATTTCTACGAAACCAAGGGGCTGATCAGCAGCCAGCGCAACGCCGGCAACCAGCGGCGCTTCAGT
CGCGAGACGCTACGCCGGGTGGTGGTGATCAAGGTCGCCCAGCGGGTCGGCATTCCCCTCGCGGAGATCGCT
CGCGCCCTGCAGACCCTGCCGGCCGGGCGCAGCCCTAGCGCGGCGGACTGGGCGCGCCTGTCGGCGCAGTGG
AAGGAGGATCTCACCGAGCGCATCGACAAGCTGCTGCTGTTGCGCGACCAACTGGACGGCTGCATCGGTTGC
GGCTGCCTGTCGCTCCAGGCCTGCCCGTTGCGCAACCCCGGCGACCAGCTGTCCGCCGAGGGGCCGGGAGCG
CACTGGCTGGACGCCGAGGGCCGCGAGCACGACGGCTAG
Translation:
MKNSCASRELSVGELARRAGVAVSALHFYETKGLISSQRNAGNQRRFSRETLRRVVVIKVAQRVGIPLAEIA
RALQTLPAGRSPSAADWARLSAQWKEDLTERIDKLLLLRDQLDGCIGCGCLSLQACPLRNPGDQLSAEGPGA
HWLDAEGREHDG*
AnnotationID:4425GeneID:4419
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 09:09:07
Gene Name:
Confidence Code:3
GeneProduct:putative redox-sensing activator of soxS
Cell Localization:()
Synonyms:soxR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative MerR-family transcriptional regulator
Functional Category Confidence Code:5
COGs:cd01110,cd00592,COG0789
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD11994.1| (AJ419596) redox-sensitive transcriptional activator SoxR
           [Enterobacter aerogenes]
          Length = 152

 Score =  189 bits (481), Expect = 4e-48
 Identities = 91/141 (64%), Positives = 109/141 (77%)

>emb|CAE34518.1| (BX640449) putative MerR-family transcriptional regulator
           [Bordetella bronchiseptica]
          Length = 154

 Score =  187 bits (476), Expect = 1e-47
 Identities = 90/137 (65%), Positives = 109/137 (79%)

>gb|AAN45547.1|AE015421_1 (AE015421) redox-sensing activator of soxS [Shigella flexneri 2a
           str. 301]
          Length = 154

 Score =  185 bits (470), Expect = 7e-47
 Identities = 88/141 (62%), Positives = 110/141 (78%)

Structural Features:
cd01110, HTH_SoxR, Helix-turn-helix transcriptional regulator SoxR.
CD-Length = 137 residues, 100.0% aligned
Score =  219 bits (560), Expect = 1e-58

cd00592, HTH_MERR, Helix-turn-helix transcription regulator MERR, 
N-terminal domain. 
CD-Length = 99 residues, 100.0% aligned
Score = 84.2 bits (208), Expect = 6e-18

COG0789, SoxR, Predicted transcriptional regulators [Transcription]
CD-Length = 124 residues,  95.2% aligned
Score = 85.6 bits (211), Expect = 3e-18
Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Genomic Context:
Comment:
ReferenceID:8839
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25982
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32507
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4419_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4419

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6758 PA2273_tr translation of PA2273 156 99.99 99.99 0 804.0
181059 gb|AAG05661.1|AE004653_4 (AE004653) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 156 99.99 99.99 0 804.0
181060 emb|CAA64771.1| (X95517) SOXR protein [Pseudomonas aeruginosa] 156 99.99 99.99 0 804.0
181064 emb|CAE43109.1| (BX640419) putative MerR-family transcriptional regulator [Bordetella pertussis] [Bordetella pertussis Tohama I] 160 58.75 72.50 10 476.0
181063 emb|CAE38991.1| (BX640434) putative MerR-family transcriptional regulator [Bordetella parapertussis] 160 58.75 72.50 10 476.0
GC ORFID: 47421How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2273Glimmer Score:
Start: 1824863Stop: 1824393
Length: 471
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2273 translation of PA2273Homolog Bit Score 314.0
Other Homologs: t_PA2273 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGAATTCCTGCGCATCCCGCGAACTGAGCGTCGGCGAACTGGCCAGGCGTGCCGGCGTGGCGGTCTCC
GCCCTGCATTTCTACGAAACCAAGGGGCTGATCAGCAGCCAGCGCAACGCCGGCAACCAGCGGCGCTTCAGT
CGCGAGACGCTACGCCGGGTGGTGGTGATCAAGGTCGCCCAGCGGGTCGGCATTCCCCTCGCGGAGATCGCT
CGCGCCCTGCAGACCCTGCCGGCCGGGCGCAGCCCTAGCGCGGCGGACTGGGCGCGCCTGTCGGCGCAGTGG
AAGGAGGATCTCACCGAGCGCATCGACAAGCTGCTGCTGTTGCGCGACCAACTGGACGGCTGCATCGGTTGC
GGCTGCCTGTCGCTCCAGGCCTGCCCGTTGCGCAACCCCGGCGACCAGCTGTCCGCCGAGGGGCCGGGAGCG
CACTGGCTGGACGCCGAGGGCCGCGAGCACGACGGCTAG