ViewGene

Locus Name:
GeneID:
Location:

GeneID:4418
TrivialName: PA14_36780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36780
PAO1 Ortholog Locus:PA2148
Sequence Length:492
Protein Length:163
Start: 3279083
Stop: 3278592
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05536.1|AE004642_3 (AE004642) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 162/163 (99%), Positives = 162/163 (99%)
Sequence:
ATGAGCGCCTGGGAGACGTTGTGGAAGATCCTCGGCGAGGAGTTCGCCGATCTCGCCGACTTCGAGCAGACC
GCCCGCGCCGCGTTGCGCCTGCTGCTGGCGGCGGCGCTCGGCGCGGTACTCGGCTACGAGCGCGAGCAGAGC
GGCAAGGCCGCCGGCCTGCGCACGCACATGCTGGTAACCCTCGGCGCGGCGCTGTTCGTCATGCCGCTGCAA
TTGCAGGGTGGCGGGGCGGACGCGCTGAGCCGGGTGATCCAGGGCACCGTCGCCGGCATCGGCTTCCTCTGC
GCCGGCACCATCCTCAAGGCAGGTCGGGAAAGCCGGGTCAGGGGCCTGACCACCGCGGCGGGACTCTGGGCC
AGCACCGCCATAGGCGTCGCGGTCGGACTCGGTCACCAGGGTACCGCGGTGCTCGGGACGGTCCTGGCGCTA
CTGGTGCTGCATGTCCTGGCCTGCCTGAACCGTTCGCCGCCATCTTCCGATAGCCATTGA
Translation:
MSAWETLWKILGEEFADLADFEQTARAALRLLLAAALGAVLGYEREQSGKAAGLRTHMLVTLGAALFVMPLQ
LQGGGADALSRVIQGTVAGIGFLCAGTILKAGRESRVRGLTTAAGLWASTAIGVAVGLGHQGTAVLGTVLAL
LVLHVLACLNRSPPSSDSH*
AnnotationID:4424GeneID:4418
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 11:11:34
Gene Name:
Confidence Code:3
GeneProduct:putative Mg(2+) transporter
Cell Localization:()
Synonyms:PA2148
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02308
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE34622.1| (BX640450) putative Mg(2+) transporter [Bordetella bronchiseptica]
          Length = 172

 Score =  167 bits (423), Expect = 2e-41
 Identities = 88/161 (54%), Positives = 112/161 (69%), Gaps = 2/161 (1%)

>emb|CAE44745.1| (BX640412) putative Mg(2+) transporter [Bordetella pertussis]
          Length = 172

 Score =  167 bits (423), Expect = 2e-41
 Identities = 88/161 (54%), Positives = 112/161 (69%), Gaps = 2/161 (1%)

>gb|AAN69142.1|AE016548_1 (AE016787) transporter, MgtC family [Pseudomonas putida KT2440]
          Length = 172

 Score =  165 bits (418), Expect = 8e-41
 Identities = 86/151 (56%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Structural Features:
pfam02308, MgtC, MgtC family. The MgtC protein is found in an operon with 
the Mg2+ transporter protein MgtB.
CD-Length = 130 residues,  93.8% aligned
Score = 85.3 bits (211), Expect = 4e-18
Identities = 59/125 (47%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Genomic Context:
Comment:
ReferenceID:8837
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25980
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32579
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4418_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4418

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6757 PA2148_tr translation of PA2148 163 99.38 99.38 0 804.0
181047 gb|AAG05536.1|AE004642_3 (AE004642) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 163 99.38 99.38 0 804.0
181048 emb|CAE34622.1| (BX640450) putative Mg(2+) transporter [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 175 50.85 64.57 15 424.0
181049 emb|CAE44745.1| (BX640412) putative Mg(2+) transporter [Bordetella pertussis] [Bordetella pertussis Tohama I] 175 50.85 64.57 15 424.0
181050 emb|CAE39096.1| (BX640434) putative Mg(2+) transporter [Bordetella parapertussis] 175 50.85 64.57 15 424.0
GC ORFID: 47420How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2148Glimmer Score:
Start: 1674831Stop: 1675322
Length: 492
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2148 translation of PA2148Homolog Bit Score 314.0
Other Homologs: t_PA2148 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGCCTGGGAGACGTTGTGGAAGATCCTCGGCGAGGAGTTCGCCGATCTCGCCGACTTCGAGCAGACC
GCCCGCGCCGCGTTGCGCCTGCTGCTGGCGGCGGCGCTCGGCGCGGTACTCGGCTACGAGCGCGAGCAGAGC
GGCAAGGCCGCCGGCCTGCGCACGCACATGCTGGTAACCCTCGGCGCGGCGCTGTTCGTCATGCCGCTGCAA
TTGCAGGGTGGCGGGGCGGACGCGCTGAGCCGGGTGATCCAGGGCACCGTCGCCGGCATCGGCTTCCTCTGC
GCCGGCACCATCCTCAAGGCAGGTCGGGAAAGCCGGGTCAGGGGCCTGACCACCGCGGCGGGACTCTGGGCC
AGCACCGCCATAGGCGTCGCGGTCGGACTCGGTCACCAGGGTACCGCGGTGCTCGGGACGGTCCTGGCGCTA
CTGGTGCTGCATGTCCTGGCCTGCCTGAACCGTTCGCCGCCATCTTCCGATAGCCATTGA