ViewGene

Locus Name:
GeneID:
Location:

GeneID:4417
TrivialName: PA14_70350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70350
PAO1 Ortholog Locus:PA5329
Sequence Length:465
Protein Length:154
Start: 6273236
Stop: 6273700
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08714.1|AE004945_8 (AE004945) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 153/154 (99%), Positives = 154/154 (100%)
Sequence:
ATGAGCAGCGCAGCACAGCGCCAGAACTACACCTTCTTCCATTCCCTGCGGGTTCGCTGGGCGGAGGTCGAT
CCGCAGGGCATCGTCTTCAACGGCAACTACCTGACCTATCTAGACGTCGCCACCACCGAGTACTACCGCCAG
CTCGGCATGTCCTACCCGGCCGACCTGCTGCGCGGCGGAGGCGACCTGTTCGCGGTGAAGAGCACCCTGGAA
TACCGCGCCCCGGCGCATTTCGACGACTGGCTGGACATCGGCACCCGCGTGGCGCGGCTGGGGCGCAGCAGC
CTGGTTTTCGAGCTGGGCATCTGGCGCGACGAGCAGCTGCTCACCGTCGGCGAGCTGGTCTACGTCTATGCG
GATGCGAACGAGCGACAGAGCCAGCCCGTACCGGACTGGCTGCGCGAGAAGATCAGGGCGTTCGAGCGACAG
TCGCCAGTGGAGTCAGGGACTCACGCCGAGTAG
Translation:
MSSAAQRQNYTFFHSLRVRWAEVDPQGIVFNGNYLTYLDVATTEYYRQLGMSYPADLLRGGGDLFAVKSTLE
YRAPAHFDDWLDIGTRVARLGRSSLVFELGIWRDEQLLTVGELVYVYADANERQSQPVPDWLREKIRAFERQ
SPVESGTHAE*
AnnotationID:4423GeneID:4417
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 18:06:30
Gene Name:
Confidence Code:3
GeneProduct:putative thioesterase
Cell Localization:()
Synonyms:PA5329
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0824
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD15475.1| (AL646066) PUTATIVE THIOESTERASE PROTEIN [Ralstonia solanacearum]
          Length = 149

 Score =  137 bits (344), Expect = 3e-32
 Identities = 76/136 (55%), Positives = 91/136 (66%), Gaps = 5/136 (3%)

Structural Features:
COG0824, FcbC, Predicted thioesterase
CD-Length = 137 residues, 100.0% aligned
Score =  130 bits (327), Expect = 1e-31
Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Genomic Context:
Comment:
ReferenceID:8835
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25978
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34752
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4417_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4417

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6756 PA5329_tr translation of PA5329 154 99.35 99.99 0 807.0
181044 gb|AAG08714.1|AE004945_8 (AE004945) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 154 99.35 99.99 0 807.0
181046 emb|CAD15475.1| (AL646066) PUTATIVE THIOESTERASE PROTEIN [Ralstonia solanacearum] 159 47.79 59.11 15 339.0
181045 gb|AAC41422.1| (L36817) ORF6 [Ralstonia eutropha] 157 47.13 61.14 15 352.0
GC ORFID: 47419How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5329Glimmer Score:
Start: 5536925Stop: 5537389
Length: 465
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5329 translation of PA5329Homolog Bit Score 315.0
Other Homologs: t_PA5329 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAGCGCAGCACAGCGCCAGAACTACACCTTCTTCCATTCCCTGCGGGTTCGCTGGGCGGAGGTCGAT
CCGCAGGGCATCGTCTTCAACGGCAACTACCTGACCTATCTAGACGTCGCCACCACCGAGTACTACCGCCAG
CTCGGCATGTCCTACCCGGCCGACCTGCTGCGCGGCGGAGGCGACCTGTTCGCGGTGAAGAGCACCCTGGAA
TACCGCGCCCCGGCGCATTTCGACGACTGGCTGGACATCGGCACCCGCGTGGCGCGGCTGGGGCGCAGCAGC
CTGGTTTTCGAGCTGGGCATCTGGCGCGACGAGCAGCTGCTCACCGTCGGCGAGCTGGTCTACGTCTATGCG
GATGCGAACGAGCGACAGAGCCAGCCCGTACCGGACTGGCTGCGCGAGAAGATCAGGGCGTTCGAGCGACAG
TCGCCAGTGGAGTCAGGGACTCACGCCGAGTAG