ViewGene
Locus Name:
GeneID:
Location:

GeneID:4416
TrivialName: PA14_60530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60530
PAO1 Ortholog Locus:PA4574
Sequence Length:489
Protein Length:162
Start: 5394852
Stop: 5394364
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07962.1|AE004871_2 (AE004871) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 161/162 (99%), Positives = 162/162 (100%)
Sequence:
ATGGAACGCTTTTTCGAAAACGCCATGTACGCCTCGCGTTGGCTGCTGGCTCCCATCTACATGGGCCTGTCG
CTGGCGCTGCTGGCGTTGACCATCAAGTTCTTCCAGGAAATATTCCACGTCATCCCGAACATCTTCGCGATG
GCCGAGGCCGACCTGATCCTGGTCCTGCTCTCGCTGATCGACATGGCTCTGGTCGGCGGCCTGCTGGTCATG
GTGATGATCTCCGGCTACGAGAACTTCGTTTCGCAGCTGGACATCGACGAAGGCAAGGAAAAGCTCAACTGG
CTGGGCAAGATGGATTCCGGCTCGCTGAAGAACAAGGTGGCCGCCTCCATCGTGGCGATCTCTTCGATCCAC
TTGTTGCGCATCTTCATGGACGCGAAGAATGTGCCGGACAACAAGCTGATGTGGTACGTGATCATCCACATG
ACCTTCGTGCTCTCGGCGTTCGCCATGGGCTACCTGGATAAGCAGACCCGTCACTGA
Translation:
MERFFENAMYASRWLLAPIYMGLSLALLALTIKFFQEIFHVIPNIFAMAEADLILVLLSLIDMALVGGLLVM
VMISGYENFVSQLDIDEGKEKLNWLGKMDSGSLKNKVAASIVAISSIHLLRIFMDAKNVPDNKLMWYVIIHM
TFVLSAFAMGYLDKQTRH*
AnnotationID:4422GeneID:4416
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 08:08:08
Gene Name:
Confidence Code:3
GeneProduct:putative membrane-associated protein
Cell Localization:()
Synonyms:PA4574
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2862
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN82182.1|AE016766_270 (AE016766) Hypothetical protein yqhA [Escherichia coli CFT073]
          Length = 174

 Score =  285 bits (728), Expect = 9e-77
 Identities = 140/162 (86%), Positives = 151/162 (93%)

>gb|AAL22027.1| (AE008845) putative membrane-associated protein [Salmonella
           typhimurium LT2]
          Length = 164

 Score =  284 bits (726), Expect = 2e-76
 Identities = 139/162 (85%), Positives = 150/162 (92%)






 
Structural Features:
COG2862, Predicted membrane protein 
CD-Length = 169 residues,  95.3% aligned
Score =  180 bits (457), Expect = 2e-46
Identities = 94/162 (58%), Positives = 126/162 (77%), Gaps = 1/162 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8833




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25976




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31641




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4416_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4416
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6755
                           PA4574_tr
                           translation of PA4574
                           162
                           99.38
                           99.99
                           0
                           808.0
     

     
     
181010
                           gb|AAG07962.1|AE004871_2
                           (AE004871) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           162
                           99.38
                           99.99
                           0
                           808.0
     

     
     
181021
                           gb|AAO58029.1|
                           (AE016872) conserved hypothetical protein TIGR00645 [Pseudomonas syringae pv. tomato str. DC3000]
                           162
                           87.65
                           91.97
                           0
                           715.0
     

     
     
181012
                           gb|AAG58138.1|AE005530_4
                           (AE005530) orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
                           164
                           85.36
                           92.07
                           2
                           727.0
     

     
     
181013
                           gb|AAC76038.1|
                           (AE000382) orf, hypothetical protein [Escherichia coli K12]
                           164
                           85.36
                           92.07
                           2
                           727.0
     

     






      

          
GC ORFID: 47418How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4574Glimmer Score: 

          
Start: 4658532Stop: 4658044

          
Length: 489


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4574 translation of PA4574Homolog Bit Score 315.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5416 (ORF: BLASTX 280.0), t_PA4574 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACGCTTTTTCGAAAACGCCATGTACGCCTCGCGTTGGCTGCTGGCTCCCATCTACATGGGCCTGTCG 
CTGGCGCTGCTGGCGTTGACCATCAAGTTCTTCCAGGAAATATTCCACGTCATCCCGAACATCTTCGCGATG 
GCCGAGGCCGACCTGATCCTGGTCCTGCTCTCGCTGATCGACATGGCTCTGGTCGGCGGCCTGCTGGTCATG 
GTGATGATCTCCGGCTACGAGAACTTCGTTTCGCAGCTGGACATCGACGAAGGCAAGGAAAAGCTCAACTGG 
CTGGGCAAGATGGATTCCGGCTCGCTGAAGAACAAGGTGGCCGCCTCCATCGTGGCGATCTCTTCGATCCAC 
TTGTTGCGCATCTTCATGGACGCGAAGAATGTGCCGGACAACAAGCTGATGTGGTACGTGATCATCCACATG 
ACCTTCGTGCTCTCGGCGTTCGCCATGGGCTACCTGGATAAGCAGACCCGTCACTGA