ViewGene
Locus Name:
GeneID:
Location:

GeneID:4415
TrivialName: PA14_09780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09780
PAO1 Ortholog Locus:PA4183
Sequence Length:468
Protein Length:155
Start: 842627
Stop: 843094
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07570.1|AE004834_10 (AE004834) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 155/155 (100%), Positives = 155/155 (100%)
Sequence:
ATGCTAGAACGGACCTTTCGCCCTGGCCTGCGGAGGTCCTGCGCCATGTCCCAGCCTTTTCTCTGGCGTCGC
GTCAACGACTCGTCCGGTTTCGCCGAGCCGCGGGTGTTCATCCGTGTCTACCTGGAACCGGGCAGCATCGAT
GCGGCCATCGCTTTCTACGAAGACCTGCAGGGCGTCGCCCACGACATGCGCTTCGACTTTCCCGAGAAACGC
CTGACACTCGCCGCAGTCGGCGCCTTCCTCCTGCTGGAGGGCAGCGACGAGGCGCTGGCGCCGTTCCGCAGC
ACCACTGGCACCCTGCTGGTGGACGACATCGAGCCCTATCACCGGCGGTTGCTGGCTGCCGGCGCGCAGATC
ATCTTCGGGCCGGCGCGCGCGCCCACCGGTGCCTGCTTCAATGCGCTGCTGCCGGACGGCACGGTGGTCGAG
TTCGTCCACCACCGGCCGCAGCCGGGCGAGGCCTGA
Translation:
MLERTFRPGLRRSCAMSQPFLWRRVNDSSGFAEPRVFIRVYLEPGSIDAAIAFYEDLQGVAHDMRFDFPEKR
LTLAAVGAFLLLEGSDEALAPFRSTTGTLLVDDIEPYHRRLLAAGAQIIFGPARAPTGACFNALLPDGTVVE
FVHHRPQPGEA*
AnnotationID:4421GeneID:4415
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 08:08:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4183
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8831




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25974




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36894




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4415_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4415
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6754
                           PA4183_tr
                           translation of PA4183
                           155
                           99.99
                           99.99
                           0
                           808.0
     

     
     
181009
                           gb|AAG07570.1|AE004834_10
                           (AE004834) hypothetical protein PA4183 [Pseudomonas aeruginosa PAO1]
                           155
                           99.99
                           99.99
                           0
                           808.0
     

     






      

          
GC ORFID: 47417How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4183Glimmer Score: 

          
Start: 4111310Stop: 4110843

          
Length: 468


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4183 translation of PA4183Homolog Bit Score 315.0

          
Other Homologs:  t_PA4183 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTAGAACGGACCTTTCGCCCTGGCCTGCGGAGGTCCTGCGCCATGTCCCAGCCTTTTCTCTGGCGTCGC 
GTCAACGACTCGTCCGGTTTCGCCGAGCCGCGGGTGTTCATCCGTGTCTACCTGGAACCGGGCAGCATCGAT 
GCGGCCATCGCTTTCTACGAAGACCTGCAGGGCGTCGCCCACGACATGCGCTTCGACTTTCCCGAGAAACGC 
CTGACACTCGCCGCAGTCGGCGCCTTCCTCCTGCTGGAGGGCAGCGACGAGGCGCTGGCGCCGTTCCGCAGC 
ACCACTGGCACCCTGCTGGTGGACGACATCGAGCCCTATCACCGGCGGTTGCTGGCTGCCGGCGCGCAGATC 
ATCTTCGGGCCGGCGCGCGCGCCCACCGGTGCCTGCTTCAATGCGCTGCTGCCGGACGGCACGGTGGTCGAG 
TTCGTCCACCACCGGCCGCAGCCGGGCGAGGCCTGA