ViewGene
Locus Name:
GeneID:
Location:

GeneID:4414
TrivialName: PA14_09990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09990
PAO1 Ortholog Locus:PA4166
Sequence Length:459
Protein Length:152
Start: 860512
Stop: 860054
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07553.1|AE004833_4 (AE004833) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 148/152 (97%), Positives = 149/152 (98%)
Sequence:
ATGCAATCCCTGCACACACTGGTATCGGTACGCCCCGTGGCACACGAGGACTTCGAGCAGTGGCTCGAACAC
TGGAAGGCCTACCAGGCGTTCTATGAAGTCGAACTCTCGGCACAGACCACCGAGGCCACCTGGCGGCGCTTC
TTCGACGAGGGCGAACCGATGCACTGCGCGGTGGCCAGCGACGGTCGCGGCCTGCATGGCATCGTCAACTTC
CTCTACCACCGCTCGACCTGGGCGGCACAGGACGTCTGCTACCTGGAAGACCTCTATGTCTCGCCCGACGTG
CGCGGCCAGCAGATCGGCAAGCAGTTGATCGAGTACGTCCGCCGGCAGGCCGAGGAACGTCGCTGCGCGCGG
CTCTACTGGCATACCCAGGAAAGCAACCACAGGGCGCAGCGCCTGTACGACTGGGTGGCGGACAAGCCGGGC
GTGATCGAATACCGCATCGAGCTCTGA
Translation:
MQSLHTLVSVRPVAHEDFEQWLEHWKAYQAFYEVELSAQTTEATWRRFFDEGEPMHCAVASDGRGLHGIVNF
LYHRSTWAAQDVCYLEDLYVSPDVRGQQIGKQLIEYVRRQAEERRCARLYWHTQESNHRAQRLYDWVADKPG
VIEYRIEL*
AnnotationID:4420GeneID:4414
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 07:07:19
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA4166
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE30719.1| (BX640437) acetyltransferase (GNAT) family protein [Bordetella
           bronchiseptica]
          Length = 149

 Score =  147 bits (370), Expect = 3e-35
 Identities = 68/145 (46%), Positives = 95/145 (65%), Gaps = 2/145 (1%)

>gb|AAO58925.1| (AE016876) acetyltransferase, GNAT family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 148

 Score =  143 bits (361), Expect = 3e-34
 Identities = 68/145 (46%), Positives = 97/145 (66%), Gaps = 2/145 (1%)








 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues,  82.9% aligned
Score = 60.7 bits (147), Expect = 8e-11
Identities = 22/68 (32%), Positives = 30/68 (44%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8829




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25972




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36899




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4414_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4414
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6752
                           PA4166_tr
                           translation of PA4166
                           152
                           97.36
                           98.02
                           0
                           806.0
     

     
     
180997
                           gb|AAG07553.1|AE004833_4
                           (AE004833) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
                           152
                           97.36
                           98.02
                           0
                           806.0
     

     
     
180998
                           gb|AAC27103.1|
                           (AF009672) unknown [Acinetobacter sp. ADP1]
                           160
                           48.75
                           68.12
                           13
                           413.0
     

     
     
181002
                           gb|AAO58925.1|
                           (AE016876) acetyltransferase, GNAT family [Pseudomonas syringae pv. tomato str. DC3000]
                           153
                           45.09
                           64.05
                           6
                           363.0
     

     
     
180999
                           emb|CAE30719.1|
                           (BX640437) acetyltransferase (GNAT) family protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           154
                           44.80
                           62.33
                           7
                           371.0
     

     






      

          
GC ORFID: 47416How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4166Glimmer Score: 

          
Start: 4093425Stop: 4093883

          
Length: 459


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4166 translation of PA4166Homolog Bit Score 315.0

          
Other Homologs:  t_PA5432 (ORF: BLASTX 146.0), psyr_15may02_Scaffold2_revised_gene2913 (ORF: BLASTX 138.0), t_PA4166 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAATCCCTGCACACACTGGTATCGGTACGCCCCGTGGCACACGAGGACTTCGAGCAGTGGCTCGAACAC 
TGGAAGGCCTACCAGGCGTTCTATGAAGTCGAACTCTCGGCACAGACCACCGAGGCCACCTGGCGGCGCTTC 
TTCGACGAGGGCGAACCGATGCACTGCGCGGTGGCCAGCGACGGTCGCGGCCTGCATGGCATCGTCAACTTC 
CTCTACCACCGCTCGACCTGGGCGGCACAGGACGTCTGCTACCTGGAAGACCTCTATGTCTCGCCCGACGTG 
CGCGGCCAGCAGATCGGCAAGCAGTTGATCGAGTACGTCCGCCGGCAGGCCGAGGAACGTCGCTGCGCGCGG 
CTCTACTGGCATACCCAGGAAAGCAACCACAGGGCGCAGCGCCTGTACGACTGGGTGGCGGACAAGCCGGGC 
GTGATCGAATACCGCATCGAGCTCTGA