ViewGene

Locus Name:
GeneID:
Location:

GeneID:4412
TrivialName: PA14_22720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22720
PAO1 Ortholog Locus:PA3207
Sequence Length:477
Protein Length:158
Start: 1976624
Stop: 1976148
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06595.1|AE004744_10 (AE004744) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/159 (96%), Positives = 155/159 (97%), Gaps = 1/159 (0%)
Sequence:
ATGACTCTTCCCGCTTCGTTGTTCCTCGATGAACGCCCGCTCGCCCAGGCCATCGCACCGCCGGAACTTCCC
GGCGACGAGCCGCAATCGCTGGTCCTGGCGGTCGAGCTGGGACAGGTCGTCCAGCAACTGCGGCAACGCTGG
GCGCGCCTCGACCTGAGCCTGCCGGAGCGCGGCACCTGGCCGCTGGAGAGCTGGCGCCCGGCCTTGCACGAG
GCGCTCTACGGCCTGCTCGGCGGCGCCGCGCAGGCCCGCCCGTGGCAGCGCATCACGCTGAATCCGGCGCTG
GACGCGCGCCACGGCCGGCTGCGCCTGGACATCCTCGGCCAGGCGGAAGAAGGCCGGCGCTGGCTGCCGGCG
GCCGTGGAAGCCGCCCGACGACTGGCCGGCTGGCAGGGCGGACGACTGCTCTGGCACGCCCAGGGCGCGTAT
TGGTGCGTACGCCTGCTGTTGCCGCTCAGCCCGGCCAGGCGCTGA
Translation:
MTLPASLFLDERPLAQAIAPPELPGDEPQSLVLAVELGQVVQQLRQRWARLDLSLPERGTWPLESWRPALHE
ALYGLLGGAAQARPWQRITLNPALDARHGRLRLDILGQAEEGRRWLPAAVEAARRLAGWQGGRLLWHAQGAY
WCVRLLLPLSPARR*
AnnotationID:4418GeneID:4412
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 08:08:40
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3207
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8825
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25968
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4412

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6750 PA3207_tr translation of PA3207 159 96.85 97.48 1 808.0
180995 gb|AAG06595.1|AE004744_10 (AE004744) hypothetical protein PA3207 [Pseudomonas aeruginosa PAO1] 159 96.85 97.48 1 808.0
GC ORFID: 47414How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3207Glimmer Score:
Start: 2977307Stop: 2977783
Length: 477
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3207 translation of PA3207Homolog Bit Score 315.0
Other Homologs: t_PA3207 (ORF: GLIMMER)
GC ORF Sequence
ATGACTCTTCCCGCTTCGTTGTTCCTCGATGAACGCCCGCTCGCCCAGGCCATCGCACCGCCGGAACTTCCC
GGCGACGAGCCGCAATCGCTGGTCCTGGCGGTCGAGCTGGGACAGGTCGTCCAGCAACTGCGGCAACGCTGG
GCGCGCCTCGACCTGAGCCTGCCGGAGCGCGGCACCTGGCCGCTGGAGAGCTGGCGCCCGGCCTTGCACGAG
GCGCTCTACGGCCTGCTCGGCGGCGCCGCGCAGGCCCGCCCGTGGCAGCGCATCACGCTGAATCCGGCGCTG
GACGCGCGCCACGGCCGGCTGCGCCTGGACATCCTCGGCCAGGCGGAAGAAGGCCGGCGCTGGCTGCCGGCG
GCCGTGGAAGCCGCCCGACGACTGGCCGGCTGGCAGGGCGGACGACTGCTCTGGCACGCCCAGGGCGCGTAT
TGGTGCGTACGCCTGCTGTTGCCGCTCAGCCCGGCCAGGCGCTGA