ViewGene
Locus Name:
GeneID:
Location:

GeneID:4411
TrivialName: PA14_25150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25150
PAO1 Ortholog Locus:PA3008
Sequence Length:486
Protein Length:161
Start: 2200828
Stop: 2200343
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06396.1|AE004726_2 (AE004726) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 161/161 (100%), Positives = 161/161 (100%)
Sequence:
ATGCAGACCTCCCACTCGCTGCCCAGCGCCCAGTTGCCACTGTTCCAGGAAGCGTTCTGGGCCAGCAACGGC
GCTCCCTTGCTCGACGATGTCATCGACAGCCCTTCCAGCGCCTCCATCGAGGAACCCGCTGCCTTTAGCGAA
CTTTCGCTCAGCGGCCTGCCAGGGCACTGCCTGACCCTGCTCGCACCGATTCTCCGCGAGCTCAGCGAGGAA
CAGGATGCCCGCTGGCTGACCCTGATCGCTCCGCCGGCGAGCCTGACCCATGAATGGCTGCGCCGCGCCGGC
CTGAACCGCGAGCGCATCCTGCTACTGCAGGCGAAGGACAACGCCGCTGCCCTGGCGCTCAGTTGCGAGGCC
TTACGCCTGGGCCGCAGCCACACCGTGGTCAGTTGGCTGGAACCGCTGAGCCGGGCGGCGCGCAAGCAACTG
TCCCGCGCCGCCCAACTGGGCCAAGCACAGAGCCTGAATATTCGTCTGGGTTGA
Translation:
MQTSHSLPSAQLPLFQEAFWASNGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSEE
QDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQL
SRAAQLGQAQSLNIRLG*
AnnotationID:4417GeneID:4411
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 18:06:04
Gene Name:
Confidence Code:3
GeneProduct:putative cell division inhibitor
Cell Localization:()
Synonyms:PA3008
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56986.1| (AE016868) cell division inhibitor, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 156

 Score =  189 bits (481), Expect = 4e-48
 Identities = 103/157 (65%), Positives = 119/157 (75%), Gaps = 4/157 (2%)

>gb|AAN67755.1|AE016406_10 (AE016782) cell division inhibitor-related protein [Pseudomonas
           putida KT2440]
          Length = 158

 Score =  182 bits (462), Expect = 6e-46
 Identities = 101/160 (63%), Positives = 115/160 (71%), Gaps = 4/160 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8823




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25966




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4411
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6749
                           PA3008_tr
                           translation of PA3008
                           161
                           99.99
                           99.99
                           0
                           806.0
     

     
     
180992
                           gb|AAG06396.1|AE004726_2
                           (AE004726) hypothetical protein PA3008 [Pseudomonas aeruginosa PAO1]
                           161
                           99.99
                           99.99
                           0
                           806.0
     

     
     
180993
                           gb|AAO56986.1|
                           (AE016868) cell division inhibitor, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           161
                           65.21
                           75.15
                           5
                           484.0
     

     
     
180994
                           gb|AAN67755.1|AE016406_10
                           (AE016782) cell division inhibitor-related protein [Pseudomonas putida KT2440]
                           162
                           62.34
                           70.98
                           5
                           467.0
     

     






      

          
GC ORFID: 47413How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3008Glimmer Score: 

          
Start: 2753099Stop: 2753584

          
Length: 486


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3008 translation of PA3008Homolog Bit Score 315.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8141 (ORF: BLASTX 189.0), t_PA3008 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGACCTCCCACTCGCTGCCCAGCGCCCAGTTGCCACTGTTCCAGGAAGCGTTCTGGGCCAGCAACGGC 
GCTCCCTTGCTCGACGATGTCATCGACAGCCCTTCCAGCGCCTCCATCGAGGAACCCGCTGCCTTTAGCGAA 
CTTTCGCTCAGCGGCCTGCCAGGGCACTGCCTGACCCTGCTCGCACCGATTCTCCGCGAGCTCAGCGAGGAA 
CAGGATGCCCGCTGGCTGACCCTGATCGCTCCGCCGGCGAGCCTGACCCATGAATGGCTGCGCCGCGCCGGC 
CTGAACCGCGAGCGCATCCTGCTACTGCAGGCGAAGGACAACGCCGCTGCCCTGGCGCTCAGTTGCGAGGCC 
TTACGCCTGGGCCGCAGCCACACCGTGGTCAGTTGGCTGGAACCGCTGAGCCGGGCGGCGCGCAAGCAACTG 
TCCCGCGCCGCCCAACTGGGCCAAGCACAGAGCCTGAATATTCGTCTGGGTTGA