ViewGene

Locus Name:
GeneID:
Location:

GeneID:441
TrivialName: PA14_39610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39610
PAO1 Ortholog Locus:PA1926
Sequence Length:1851
Protein Length:616
Start: 3527735
Stop: 3525885
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05314.1|AE004619_1 (AE004619) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 615/616 (99%), Positives = 616/616 (100%)
Sequence:
ATGCCCGGCACCGATGCCGCCGGCTGCACGCGCATCCCGGGCAAGGACCTGCCGCTGGAGCAGACCATCGCC
AACCTGTCGGCCATCCTCGCCGGCCTCGGCATGAAGATCGAGATCGCCTCCTGGCGCAACATCGTGCCCAAC
GTCTGGTCGCTGCACATCCGCGATGCGCAGTCGCCGATGTGCTTCACCAACGGCAAGGGCGCGAGCAAGGAA
AGCGCGCTGGCCTCGGCGCTGGGCGAATTCATCGAGCGGCTGAACTGCAACTTCTTCTACAACGACCAGTAC
TGGGGAGAAGAGATCGCCAATGCGGCGTTCGTCCATTACCCGGACGAACGCTGGTTCAAGCCCGGCCGCGAC
GATGCGCTGCCGCTGGGACTGCTCGACGGCCATTGCCTGGCGATCTACGACCCCGACGGCGAGCTGCGCGGC
TCGCACCTGTACGACACCAACTCGGGCAATGTGCAGCGCGGTATCTGCGCCTTGCCCTTCGTGCGCCAGTCC
GACGGCCAGGTGGTGTATTTCCCCTCCAACCTGATCGAGAACCTCTACCTCAGCAACGGCATGAGCGCCGGT
AATACCCTGGCCGAAGCGCAGGTGCAGTGCCTGTCGGAGATCTTCGAGCGTGCGGTCAAGCGGCAAATCCTC
GAAGGCGAACTGGCGCTGCCGGACGTGCCGCCGGAGGTGCTGGCCAAGTACCCGGGCATCCTCGCCGGGATC
CGCGGCCTGGAAGAGCAGGGCTTCCCGGTACTGGTCAAGGACGCCTCGCTGGGCGGCGAATTCCCGGTGATG
TGCGTGACCCTGATGAATCCGCGCACCGGCGGCGTGTTCGCTTCCTTCGGCGCCCACCCGAGCTTCGAGGTG
GCCCTGGAGCGCAGCCTGACCGAACTGCTCCAGGGGCGCAGCTTCGAAGGCCTGAACGACCTGCCCCAGCCG
ACCTTCGAAAGCCATGCGCTGACCGAGCCGAACAACTTCGTCGAGCATTTCATCGATTCCAGCGGCGTGGTG
TCCTGGCGCTTCTTCAGCGCCAAGGCCGATTTCCCGTTCGTCGAGTGGGACTTCACCCGGCAGGGCGAGGCT
GCCAACGCCGAGGAAGCCGCGACCCTGTTCGGCATCCTCGAAGCCATGGGCAAGCAGGTCTACATGGCGGTG
TACGAGCACCTCGGCGCTACGGCCTGCCGGATCCTGGTGCCGGGCTACTCGGAAATCTATCCGGTGGAAGAC
CTGATCTGGGACAACACCAACAAGGCCCTGGCGTTCCGCGAGGACATCCTCAACCTGCACCGCCTCGACGAT
GCTGCGCTCGGGGCGTTGCTGGAGCGCCTGGAAGACTGCGAGGTGGACGACTACACCGACATCACCACGCTG
ATCGGCGTCGAGTTCGACGACAACACGGTCTGGGGCCAACTGACCATCCTCGAGCTGAAAGTGCTCATCGGC
CTCGCCCTGAAGCGCTTCGAAGACGCCAAGGAAGGCGTGGAGGCGTTCCTCCAGTACAACGACAACAGCGTC
GAGCGCGGCCTGTTCTACCAGGCGCTGAACGTGGTGCTGGAGGTCCTCCTCGACGACGAGCTGGAGATCGCC
GACTACGAGGCCAATTTCCGCCGCATGTTCGGCGACGCGCGGATGGACGCCGCGCTGGGCTCGGTGGACGGC
AGCGTGCGCTTCTTCGGCCTGACGCCGACCAGCATGAAGCTGGAAGGGCTCGACCGGCACCTGCGGCTGATC
GACAGCTACAAGAAGCTGCACGCGGCGCGAGCCAGGATGCAGCCCGTGGTCGACGGCGAGGCCGGCGCTGCC
GCGGCTGGCGGCCTCAAGCCTCGGCGCATGGCGATCCGCAAGCGCAAGTGA
Translation:
MPGTDAAGCTRIPGKDLPLEQTIANLSAILAGLGMKIEIASWRNIVPNVWSLHIRDAQSPMCFTNGKGASKE
SALASALGEFIERLNCNFFYNDQYWGEEIANAAFVHYPDERWFKPGRDDALPLGLLDGHCLAIYDPDGELRG
SHLYDTNSGNVQRGICALPFVRQSDGQVVYFPSNLIENLYLSNGMSAGNTLAEAQVQCLSEIFERAVKRQIL
EGELALPDVPPEVLAKYPGILAGIRGLEEQGFPVLVKDASLGGEFPVMCVTLMNPRTGGVFASFGAHPSFEV
ALERSLTELLQGRSFEGLNDLPQPTFESHALTEPNNFVEHFIDSSGVVSWRFFSAKADFPFVEWDFTRQGEA
ANAEEAATLFGILEAMGKQVYMAVYEHLGATACRILVPGYSEIYPVEDLIWDNTNKALAFREDILNLHRLDD
AALGALLERLEDCEVDDYTDITTLIGVEFDDNTVWGQLTILELKVLIGLALKRFEDAKEGVEAFLQYNDNSV
ERGLFYQALNVVLEVLLDDELEIADYEANFRRMFGDARMDAALGSVDGSVRFFGLTPTSMKLEGLDRHLRLI
DSYKKLHAARARMQPVVDGEAGAAAAGGLKPRRMAIRKRK*
AnnotationID:450GeneID:441
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1926
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:885
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18027
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32783
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:441_cdd.html
URL:
Homologs By Global Alignment
Gene ID:441

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
757 PA1926_tr translation of PA1926 616 99.83 99.99 0 3203.0
33273 gb|AAG05314.1|AE004619_1 (AE004619) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 616 99.83 99.99 0 3203.0
33275 gb|AAN53871.1|AE015524_6 (AE015524) conserved hypothetical protein [Shewanella oneidensis MR-1] 617 68.39 79.90 26 2191.0
33274 gb|AAN69220.1|AE016556_8 (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440] 756 67.32 72.75 168 2671.0
33285 emb|CAC90214.1| (AJ414148) conserved hypothetical protein [Yersinia pestis CO92] 620 44.83 60.00 36 1361.0
GC ORFID: 43443How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1926Glimmer Score:
Start: 1426176Stop: 1428026
Length: 1851
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1926 translation of PA1926Homolog Bit Score 1238.0
Other Homologs: t_PA1926 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCGGCACCGATGCCGCCGGCTGCACGCGCATCCCGGGCAAGGACCTGCCGCTGGAGCAGACCATCGCC
AACCTGTCGGCCATCCTCGCCGGCCTCGGCATGAAGATCGAGATCGCCTCCTGGCGCAACATCGTGCCCAAC
GTCTGGTCGCTGCACATCCGCGATGCGCAGTCGCCGATGTGCTTCACCAACGGCAAGGGCGCGAGCAAGGAA
AGCGCGCTGGCCTCGGCGCTGGGCGAATTCATCGAGCGGCTGAACTGCAACTTCTTCTACAACGACCAGTAC
TGGGGAGAAGAGATCGCCAATGCGGCGTTCGTCCATTACCCGGACGAACGCTGGTTCAAGCCCGGCCGCGAC
GATGCGCTGCCGCTGGGACTGCTCGACGGCCATTGCCTGGCGATCTACGACCCCGACGGCGAGCTGCGCGGC
TCGCACCTGTACGACACCAACTCGGGCAATGTGCAGCGCGGTATCTGCGCCTTGCCCTTCGTGCGCCAGTCC
GACGGCCAGGTGGTGTATTTCCCCTCCAACCTGATCGAGAACCTCTACCTCAGCAACGGCATGAGCGCCGGT
AATACCCTGGCCGAAGCGCAGGTGCAGTGCCTGTCGGAGATCTTCGAGCGTGCGGTCAAGCGGCAAATCCTC
GAAGGCGAACTGGCGCTGCCGGACGTGCCGCCGGAGGTGCTGGCCAAGTACCCGGGCATCCTCGCCGGGATC
CGCGGCCTGGAAGAGCAGGGCTTCCCGGTACTGGTCAAGGACGCCTCGCTGGGCGGCGAATTCCCGGTGATG
TGCGTGACCCTGATGAATCCGCGCACCGGCGGCGTGTTCGCTTCCTTCGGCGCCCACCCGAGCTTCGAGGTG
GCCCTGGAGCGCAGCCTGACCGAACTGCTCCAGGGGCGCAGCTTCGAAGGCCTGAACGACCTGCCCCAGCCG
ACCTTCGAAAGCCATGCGCTGACCGAGCCGAACAACTTCGTCGAGCATTTCATCGATTCCAGCGGCGTGGTG
TCCTGGCGCTTCTTCAGCGCCAAGGCCGATTTCCCGTTCGTCGAGTGGGACTTCACCCGGCAGGGCGAGGCT
GCCAACGCCGAGGAAGCCGCGACCCTGTTCGGCATCCTCGAAGCCATGGGCAAGCAGGTCTACATGGCGGTG
TACGAGCACCTCGGCGCTACGGCCTGCCGGATCCTGGTGCCGGGCTACTCGGAAATCTATCCGGTGGAAGAC
CTGATCTGGGACAACACCAACAAGGCCCTGGCGTTCCGCGAGGACATCCTCAACCTGCACCGCCTCGACGAT
GCTGCGCTCGGGGCGTTGCTGGAGCGCCTGGAAGACTGCGAGGTGGACGACTACACCGACATCACCACGCTG
ATCGGCGTCGAGTTCGACGACAACACGGTCTGGGGCCAACTGACCATCCTCGAGCTGAAAGTGCTCATCGGC
CTCGCCCTGAAGCGCTTCGAAGACGCCAAGGAAGGCGTGGAGGCGTTCCTCCAGTACAACGACAACAGCGTC
GAGCGCGGCCTGTTCTACCAGGCGCTGAACGTGGTGCTGGAGGTCCTCCTCGACGACGAGCTGGAGATCGCC
GACTACGAGGCCAATTTCCGCCGCATGTTCGGCGACGCGCGGATGGACGCCGCGCTGGGCTCGGTGGACGGC
AGCGTGCGCTTCTTCGGCCTGACGCCGACCAGCATGAAGCTGGAAGGGCTCGACCGGCACCTGCGGCTGATC
GACAGCTACAAGAAGCTGCACGCGGCGCGAGCCAGGATGCAGCCCGTGGTCGACGGCGAGGCCGGCGCTGCC
GCGGCTGGCGGCCTCAAGCCTCGGCGCATGGCGATCCGCAAGCGCAAGTGA