ViewGene
Locus Name:
GeneID:
Location:

GeneID:4408
TrivialName: PA14_08060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08060
PAO1 Ortholog Locus:PA0621
Sequence Length:459
Protein Length:152
Start: 693583
Stop: 694041
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04010.1|AE004498_5 (AE004498) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 150/152 (98%), Positives = 150/152 (98%)
Sequence:
ATGAAGGGCGAATATTATTTCTCTCCAAGCCAGGTGGCATTCTATCCGGCCTCCTTGCGAGAGGTTTATGAA
TACGCAGGCTGCTGGCCAGTCGATGGCGAGTGGGTCAGCGCAGAGCTACATGAACAACTGATGAACGAACAG
GCGGCAGGCCGAGCAATCAGTTCCGACGTGAAGGGGAACCCAGTAGCGATCGAGCGCCCTCCGCTTTCCCGT
CAGCAACGTAGCGCCCATGAGCGGAGATGGCGGGATAGTCAGCTGTTGGCGACCGACGGCCTAGTTGTTCGC
CATCGAGATCAATTGGAAACCGGAAAGGAAACGACCTTACTCCCTGTCCAATACCATGAACTCATGTCGTAC
AGAGCCAGCTTACGGGATTGGCCGGAAGAGCCTTTATTTCCCGACAGTGGCGGACGTCCGTCCGTACCAGAT
TGGCTCAGACGTTATGTCACCCCCTGA
Translation:
MKGEYYFSPSQVAFYPASLREVYEYAGCWPVDGEWVSAELHEQLMNEQAAGRAISSDVKGNPVAIERPPLSR
QQRSAHERRWRDSQLLATDGLVVRHRDQLETGKETTLLPVQYHELMSYRASLRDWPEEPLFPDSGGRPSVPD
WLRRYVTP*
AnnotationID:4414GeneID:4408
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:16
Gene Name:
Confidence Code:3
GeneProduct:putative tail fiber assembly protein
Cell Localization:()
Synonyms:PA0621
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8817




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25960




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4408
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6745
                           PA0621_tr
                           translation of PA0621
                           152
                           98.68
                           98.68
                           0
                           810.0
     

     
     
180896
                           gb|AAG04010.1|AE004498_5
                           (AE004498) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           152
                           98.68
                           98.68
                           0
                           810.0
     

     
     
180897
                           dbj|BAA83159.1|
                           (AB030825) PRF16~similar to orf21 of phiCTX: tail fiber assembly [Pseudomonas aeruginosa]
                           152
                           98.68
                           98.68
                           0
                           810.0
     

     






      

          
GC ORFID: 47410How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0621Glimmer Score: 

          
Start: 6494926Stop: 6495384

          
Length: 459


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0621 translation of PA0621Homolog Bit Score 316.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAGGGCGAATATTATTTCTCTCCAAGCCAGGTGGCATTCTATCCGGCCTCCTTGCGAGAGGTTTATGAA 
TACGCAGGCTGCTGGCCAGTCGATGGCGAGTGGGTCAGCGCAGAGCTACATGAACAACTGATGAACGAACAG 
GCGGCAGGCCGAGCAATCAGTTCCGACGTGAAGGGGAACCCAGTAGCGATCGAGCGCCCTCCGCTTTCCCGT 
CAGCAACGTAGCGCCCATGAGCGGAGATGGCGGGATAGTCAGCTGTTGGCGACCGACGGCCTAGTTGTTCGC 
CATCGAGATCAATTGGAAACCGGAAAGGAAACGACCTTACTCCCTGTCCAATACCATGAACTCATGTCGTAC 
AGAGCCAGCTTACGGGATTGGCCGGAAGAGCCTTTATTTCCCGACAGTGGCGGACGTCCGTCCGTACCAGAT 
TGGCTCAGACGTTATGTCACCCCCTGA