ViewGene
Locus Name:
GeneID:
Location:

GeneID:4406
TrivialName: PA14_32850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32850
PAO1 Ortholog Locus:
Sequence Length:1017
Protein Length:338
Start: 2876003
Stop: 2874987
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05845.1|AE004673_5 (AE004673) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 168/324 (51%), Positives = 206/324 (63%), Gaps = 3/324 (0%)
Sequence:
CTGCTCCGCTTCACTCGTCACTACAACAGCAGCAACGGACTCTGGACCCACAACCTAAGCGCCCGCCTCACC
CTACAGAGCCATATGGTCACCCTGCACCGGGAGGACGGTCGGACCCTCGACTTCATCCGCCTGTACGACCGC
ATCACCTCCCAGGCCGATAACCTCGGCCGATTGGAGAAGATCGATGGCGGCTGGCGCTACGACGAACCGAGC
GGCCTGCGCCTGGATTTCGACGAAGCCGGCGCGCTCGTCGAACTGGTCCAAGCCAGCGAAAAGCTGCGTCTG
GCCAGGGAGGGAGGGCAGGTTCGCGTTTCCCACAACCGCTACCCCGGCACCTTCAGCTTCGCCGAGGATGAC
CGCCAACAACCACTGCGCCTCACCGCTCCAGGCCTGGCAGTGCTCTACAACTATGAAGGCGGACACCTGATC
CGGGTCGCCCGCGACGCCGCCGGCCAGGCCAGTGAGCAGCGTTACCACTATGAAGACCCGCGCAACCCGCGG
CTACTCACCGGCATCACCGACAACCGCGGCGTGCGCTTCGCCACCTGGCGCTACGACGAAAAGGGCCGAGCT
GTGTCCAGCGAACACGCCAACGGCGCGGAGAAGGTCAGCCTCGCCTACAACTTCGATGGCTCCACCACTGTC
ACCAACGAATACGGCAAGCAGGCTACCTACCGCTTCCAGGTGATCCGCGGTAGCAAACACATCGTCGCCATC
GAAGGGCAACCCTCTCCCAACTGCCCCAGCAGCAATTCCACCTTTACCTATGACGAACGCGGCCTGCTCAAG
ACCCGCCGCGACAACCAGGGCAACCTGACCACCTACGAATACAACGAGCGCGGCCTGGAAATCCTACGCACC
GAGGCCGCCGGCACTGCCCAGGCTCGCACTATCGCCACCGACTGGCACCCGAGACTGGCACTTCCAGTGCGG
CTCGAAGAGGCGGGCCGCAGTACGCATTACTGGTATGACGGCGACGGTAACAAAGTAGGTGAGACGGTGATA
GGGAACTGA
Translation:
MLRFTRHYNSSNGLWTHNLSARLTLQSHMVTLHREDGRTLDFIRLYDRITSQADNLGRLEKIDGGWRYDEPS
GLRLDFDEAGALVELVQASEKLRLAREGGQVRVSHNRYPGTFSFAEDDRQQPLRLTAPGLAVLYNYEGGHLI
RVARDAAGQASEQRYHYEDPRNPRLLTGITDNRGVRFATWRYDEKGRAVSSEHANGAEKVSLAYNFDGSTTV
TNEYGKQATYRFQVIRGSKHIVAIEGQPSPNCPSSNSTFTYDERGLLKTRRDNQGNLTTYEYNERGLEILRT
EAAGTAQARTIATDWHPRLALPVRLEEAGRSTHYWYDGDGNKVGETVIGN*
AnnotationID:4412GeneID:4406
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 16:04:18
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
49.4% identical to PA2457 (adjacent GeneID 4178 has 56% identity to PA2457).
One more match to PA2457 (59.1%) at GeneID = 4081 (which is adjacent 
to GeneID = 1501, a 40% match to PA2458).






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15078




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25956




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4406
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6743
                           PA2457_tr
                           translation of PA2457
                           340
                           49.41
                           60.58
                           16
                           812.0
     

     
     
180871
                           gb|AAG05845.1|AE004673_5
                           (AE004673) hypothetical protein PA2457 [Pseudomonas aeruginosa PAO1]
                           340
                           49.41
                           60.58
                           16
                           812.0
     

     






      

          
GC ORFID: 47408How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2457Glimmer Score: 

          
Start: 2077921Stop: 2078937

          
Length: 1017


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2457 translation of PA2457Homolog Bit Score 316.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7450 (ORF: BLASTX 163.0), t_PA2457 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGCTCCGCTTCACTCGTCACTACAACAGCAGCAACGGACTCTGGACCCACAACCTAAGCGCCCGCCTCACC 
CTACAGAGCCATATGGTCACCCTGCACCGGGAGGACGGTCGGACCCTCGACTTCATCCGCCTGTACGACCGC 
ATCACCTCCCAGGCCGATAACCTCGGCCGATTGGAGAAGATCGATGGCGGCTGGCGCTACGACGAACCGAGC 
GGCCTGCGCCTGGATTTCGACGAAGCCGGCGCGCTCGTCGAACTGGTCCAAGCCAGCGAAAAGCTGCGTCTG 
GCCAGGGAGGGAGGGCAGGTTCGCGTTTCCCACAACCGCTACCCCGGCACCTTCAGCTTCGCCGAGGATGAC 
CGCCAACAACCACTGCGCCTCACCGCTCCAGGCCTGGCAGTGCTCTACAACTATGAAGGCGGACACCTGATC 
CGGGTCGCCCGCGACGCCGCCGGCCAGGCCAGTGAGCAGCGTTACCACTATGAAGACCCGCGCAACCCGCGG 
CTACTCACCGGCATCACCGACAACCGCGGCGTGCGCTTCGCCACCTGGCGCTACGACGAAAAGGGCCGAGCT 
GTGTCCAGCGAACACGCCAACGGCGCGGAGAAGGTCAGCCTCGCCTACAACTTCGATGGCTCCACCACTGTC 
ACCAACGAATACGGCAAGCAGGCTACCTACCGCTTCCAGGTGATCCGCGGTAGCAAACACATCGTCGCCATC 
GAAGGGCAACCCTCTCCCAACTGCCCCAGCAGCAATTCCACCTTTACCTATGACGAACGCGGCCTGCTCAAG 
ACCCGCCGCGACAACCAGGGCAACCTGACCACCTACGAATACAACGAGCGCGGCCTGGAAATCCTACGCACC 
GAGGCCGCCGGCACTGCCCAGGCTCGCACTATCGCCACCGACTGGCACCCGAGACTGGCACTTCCAGTGCGG 
CTCGAAGAGGCGGGCCGCAGTACGCATTACTGGTATGACGGCGACGGTAACAAAGTAGGTGAGACGGTGATA 
GGGAACTGA