ViewGene
Locus Name:
GeneID:
Location:

GeneID:4405
TrivialName: PA14_43730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43730
PAO1 Ortholog Locus:PA1606
Sequence Length:477
Protein Length:158
Start: 3894808
Stop: 3894332
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04995.1|AE004588_8 (AE004588) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/158 (99%), Positives = 157/158 (99%)
Sequence:
ATGTCCTTCATCCGTTCTTGCATCAGTCGTTCCGTCTTCCTGCTCGGCGCCGGCGTCGCCGTGGCGGCGCAG
GCCGAGGTGCGTATCGACGGCCCCATCGAATATGGCGTGTTCGAAAGCCGCTACCAGGATTTCCAGCCCGGC
GAACGGGTATTGACCCGTAGCGAGCAGAACATCCAGCAGACCACCGAAGTCCCGGCCAAGCTCGGCACCAAG
TTCGGCATGCGTTATCAACTCAGCGGCAAGCAGGAAGGCGATACGCCTTTGACGCTGCTCTACCTCACCCCG
GGCGTGGTCACTCCGGATGGCCAGCGGCATGACAAGTTCGAAGTGGTGCAGAAGCTGGTGCCGGGCGCGCCG
ACCGATGTCATGGCCTACGAATTCACCGAGCCGCACGAAGTGGTGAAGGGCGAATGGCGGTTGATGGTGTTC
CAGGGCGATCGCCTGCTGGCGTCGAAATCCTTCGACGTGCGCTGA
Translation:
MSFIRSCISRSVFLLGAGVAVAAQAEVRIDGPIEYGVFESRYQDFQPGERVLTRSEQNIQQTTEVPAKLGTK
FGMRYQLSGKQEGDTPLTLLYLTPGVVTPDGQRHDKFEVVQKLVPGAPTDVMAYEFTEPHEVVKGEWRLMVF
QGDRLLASKSFDVR*
AnnotationID:4411GeneID:4405
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 17:05:05
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1606
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8811




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25954




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4405
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6742
                           PA1606_tr
                           translation of PA1606
                           158
                           99.36
                           99.36
                           0
                           809.0
     

     
     
180870
                           gb|AAG04995.1|AE004588_8
                           (AE004588) hypothetical protein PA1606 [Pseudomonas aeruginosa PAO1]
                           158
                           99.36
                           99.36
                           0
                           809.0
     

     






      

          
GC ORFID: 47407How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1606Glimmer Score: 

          
Start: 1059101Stop: 1059577

          
Length: 477


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1606 translation of PA1606Homolog Bit Score 316.0

          
Other Homologs:  t_PA1606 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTTCATCCGTTCTTGCATCAGTCGTTCCGTCTTCCTGCTCGGCGCCGGCGTCGCCGTGGCGGCGCAG 
GCCGAGGTGCGTATCGACGGCCCCATCGAATATGGCGTGTTCGAAAGCCGCTACCAGGATTTCCAGCCCGGC 
GAACGGGTATTGACCCGTAGCGAGCAGAACATCCAGCAGACCACCGAAGTCCCGGCCAAGCTCGGCACCAAG 
TTCGGCATGCGTTATCAACTCAGCGGCAAGCAGGAAGGCGATACGCCTTTGACGCTGCTCTACCTCACCCCG 
GGCGTGGTCACTCCGGATGGCCAGCGGCATGACAAGTTCGAAGTGGTGCAGAAGCTGGTGCCGGGCGCGCCG 
ACCGATGTCATGGCCTACGAATTCACCGAGCCGCACGAAGTGGTGAAGGGCGAATGGCGGTTGATGGTGTTC 
CAGGGCGATCGCCTGCTGGCGTCGAAATCCTTCGACGTGCGCTGA