ViewGene
Locus Name:
GeneID:
Location:

GeneID:4403
TrivialName: PA14_48710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48710
PAO1 Ortholog Locus:PA1206
Sequence Length:474
Protein Length:157
Start: 4332765
Stop: 4332292
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04595.1|AE004550_11 (AE004550) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/157 (100%), Positives = 157/157 (100%)
Sequence:
ATGCAATTCGAACACCTGGTCCAGGTCAACGACCGGACGCTTGTCGACCTGCCGGTCCTCGACCGGCTGCAA
CTCTGGGAAGGCCTGGTCTGCCGTGCGCGCGAGCCACAGTATTTCGTCGTCGGCCTGGAGCGTTTCGAGATC
CTCGTCGATGACGGCGACCGCCTGCACCGGCGCCTGTACCTGCCGGGTCTGGTGGTCGAGGACGAAGTCGTG
CTGAAGGCGCCGGACAGTGCCCACTACAGCATCAAGCCGAGCGCCGAGGTGGCCGGCGGCAGCCTCGACATG
ACCATCGAGGAGCCGGAGCCCGGCTCGCTGTTCGTGCGTTTCGCCTACTGCACCCGCTACCTGCAGCCGCTG
GGCGACGAACTGCCCTACGACGCCTTCGTCAAGCAGGCCTATATCGCCATGGATGTGGAGACCATCGCCACC
ATCCGCGACCGGTTCGGCGCCAGCGCCGCCAGCGGGAGTTGA
Translation:
MQFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRAREPQYFVVGLERFEILVDDGDRLHRRLYLPGLVVEDEVV
LKAPDSAHYSIKPSAEVAGGSLDMTIEEPEPGSLFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIAT
IRDRFGASAASGS*
AnnotationID:4409GeneID:4403
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 12:12:30
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1206
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8807




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25950




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4403
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6740
                           PA1206_tr
                           translation of PA1206
                           157
                           99.99
                           99.99
                           0
                           809.0
     

     
     
180811
                           gb|AAG04595.1|AE004550_11
                           (AE004550) hypothetical protein PA1206 [Pseudomonas aeruginosa PAO1]
                           157
                           99.99
                           99.99
                           0
                           809.0
     

     






      

          
GC ORFID: 47405How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1206Glimmer Score: 

          
Start: 621143Stop: 621616

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1206 translation of PA1206Homolog Bit Score 316.0

          
Other Homologs:  t_PA1206 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAATTCGAACACCTGGTCCAGGTCAACGACCGGACGCTTGTCGACCTGCCGGTCCTCGACCGGCTGCAA 
CTCTGGGAAGGCCTGGTCTGCCGTGCGCGCGAGCCACAGTATTTCGTCGTCGGCCTGGAGCGTTTCGAGATC 
CTCGTCGATGACGGCGACCGCCTGCACCGGCGCCTGTACCTGCCGGGTCTGGTGGTCGAGGACGAAGTCGTG 
CTGAAGGCGCCGGACAGTGCCCACTACAGCATCAAGCCGAGCGCCGAGGTGGCCGGCGGCAGCCTCGACATG 
ACCATCGAGGAGCCGGAGCCCGGCTCGCTGTTCGTGCGTTTCGCCTACTGCACCCGCTACCTGCAGCCGCTG 
GGCGACGAACTGCCCTACGACGCCTTCGTCAAGCAGGCCTATATCGCCATGGATGTGGAGACCATCGCCACC 
ATCCGCGACCGGTTCGGCGCCAGCGCCGCCAGCGGGAGTTGA