ViewGene
Locus Name:
GeneID:
Location:

GeneID:4402
TrivialName: PA14_13710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13710
PAO1 Ortholog Locus:PA3881
Sequence Length:465
Protein Length:154
Start: 1177472
Stop: 1177008
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07268.1|AE004805_6 (AE004805) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/154 (100%), Positives = 154/154 (100%)
Sequence:
ATGCTGATCGGTGCGCTGCTGGTTCTCACCTGGGTCATCCTCCTCGTCCGATACCCGGCCAAGGCCCTGCCG
GTCTCCCTGGCGGCTCTCGCCGGGCTGGGCCTGGTGGCGGCCTGGGTGATCTGGCAGGACAACGACGAAAGC
CGCCACCTGCAACGCCAGGAACTGCGCCTGAGCTATGCGCCGGAACGCTGTCCGGTGGACCGACCGCTGGCG
GTCGAGCTGAAGAACGGCAGCGACCGTCCGTTGCTGGAGCTACGCTGGAGGATCGCCGCCTACCGCCCCGGC
GACAGCGTCAACCTGGCCGACACCAGCTTCGACAGCCCGCGCTACCGGGCGCCGAACGCCCTGCTCGGCGGC
GACAGCTGGCACGACTGCCTGCCGCTGCCGCCGCTGCGTCCGGGCTATCGCGCCAGCACCCTGGAATTCCGC
GCCGAACGCCTGGACGGGCGTTTCGGCAACTGA
Translation:
MLIGALLVLTWVILLVRYPAKALPVSLAALAGLGLVAAWVIWQDNDESRHLQRQELRLSYAPERCPVDRPLA
VELKNGSDRPLLELRWRIAAYRPGDSVNLADTSFDSPRYRAPNALLGGDSWHDCLPLPPLRPGYRASTLEFR
AERLDGRFGN*
AnnotationID:4408GeneID:4402
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 12:12:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3881
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8805




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25948




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4402
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6739
                           PA3881_tr
                           translation of PA3881
                           154
                           99.99
                           99.99
                           0
                           812.0
     

     
     
180808
                           gb|AAG07268.1|AE004805_6
                           (AE004805) hypothetical protein PA3881 [Pseudomonas aeruginosa PAO1]
                           154
                           99.99
                           99.99
                           0
                           812.0
     

     
     
180809
                           gb|AAN66899.1|AE016318_6
                           (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440]
                           154
                           66.88
                           79.87
                           0
                           567.0
     

     
     
180810
                           gb|AAO54751.1|
                           (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           154
                           61.03
                           74.02
                           0
                           501.0
     

     






      

          
GC ORFID: 47404How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3881Glimmer Score: 

          
Start: 3776466Stop: 3776930

          
Length: 465


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3881 translation of PA3881Homolog Bit Score 317.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5004 (ORF: BLASTX 195.0), t_PA3881 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGATCGGTGCGCTGCTGGTTCTCACCTGGGTCATCCTCCTCGTCCGATACCCGGCCAAGGCCCTGCCG 
GTCTCCCTGGCGGCTCTCGCCGGGCTGGGCCTGGTGGCGGCCTGGGTGATCTGGCAGGACAACGACGAAAGC 
CGCCACCTGCAACGCCAGGAACTGCGCCTGAGCTATGCGCCGGAACGCTGTCCGGTGGACCGACCGCTGGCG 
GTCGAGCTGAAGAACGGCAGCGACCGTCCGTTGCTGGAGCTACGCTGGAGGATCGCCGCCTACCGCCCCGGC 
GACAGCGTCAACCTGGCCGACACCAGCTTCGACAGCCCGCGCTACCGGGCGCCGAACGCCCTGCTCGGCGGC 
GACAGCTGGCACGACTGCCTGCCGCTGCCGCCGCTGCGTCCGGGCTATCGCGCCAGCACCCTGGAATTCCGC 
GCCGAACGCCTGGACGGGCGTTTCGGCAACTGA