ViewGene
Locus Name:
GeneID:
Location:

GeneID:4401
TrivialName: PA14_16670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16670
PAO1 Ortholog Locus:PA3689
Sequence Length:471
Protein Length:156
Start: 1426595
Stop: 1427065
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07077.1|AE004788_7 (AE004788) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 154/156 (98%), Positives = 155/156 (99%)
Sequence:
ATGAAGATCGGTGAGCTGGCGAAGAGAACCGGTTGCCCGGTGGAGACCATCCGCTACTACGAGCGCGAAGGC
CTGTTGCCCGAGCCCGCGCGTAGCGAAGGCAACTATCGGCAATACACCCTGGCGCATGTCGAGCGCCTGTCG
TTCATCCGTCACTGCCGCTCGCTGGACATGACCCAGGAGGAAATCCGTACCCTGCTGGCGTTGCGCGACCGT
CCCGAGGCGGATTGCGGCACCGCCAACCGGCTGATCGACGAGCACCTGCATCACGTCGAGGTGCGCATCGCC
GAACTCCAGGCATTGCGCGAGCAACTGCAGGATCTCGGCTCACGCTGTACGGTCGCCGGCAACAGCCAGGCC
TGCGGCATCCTCCGCGAACTGGAGCAGCCCGCGCCGCTGTCGCCTATCCCCGAGGAATGCGCCGAGGCCGGG
CACATGCACGTTCCCGGCGTGCACCGCCGGCATGGCTGA
Translation:
MKIGELAKRTGCPVETIRYYEREGLLPEPARSEGNYRQYTLAHVERLSFIRHCRSLDMTQEEIRTLLALRDR
PEADCGTANRLIDEHLHHVEVRIAELQALREQLQDLGSRCTVAGNSQACGILRELEQPAPLSPIPEECAEAG
HMHVPGVHRRHG*
AnnotationID:4407GeneID:4401
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 11:11:46
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator CadR
Cell Localization:()
Synonyms:cadR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative transcriptional regulator, MerR family
Functional Category Confidence Code:5
COGs:COG0789,pfam00376
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70705.1|AE016714_3 (AE016793) transcriptional regulator, MerR family [Pseudomonas
           putida KT2440]
          Length = 147

 Score =  174 bits (442), Expect = 1e-43
 Identities = 90/147 (61%), Positives = 106/147 (72%), Gaps = 2/147 (1%)

>gb|AAO58706.1| (AE016875) transcriptional regulator CadR [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 148

 Score =  171 bits (432), Expect = 2e-42
 Identities = 90/147 (61%), Positives = 103/147 (70%), Gaps = 1/147 (0%)








 
Structural Features:
COG0789, SoxR, Predicted transcriptional regulators [Transcription]
CD-Length = 124 residues,  87.9% aligned
Score = 94.8 bits (235), Expect = 9e-21
Identities = 46/109 (42%), Positives = 60/109 (55%), Gaps = 1/109 (0%)

pfam00376, MerR, MerR family regulatory protein.
CD-Length = 38 residues, 100.0% aligned
Score = 56.7 bits (137), Expect = 2e-09
Identities = 23/38 (60%), Positives = 27/38 (71%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8803




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25946




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31858




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4401_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4401
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6738
                           PA3689_tr
                           translation of PA3689
                           156
                           98.71
                           99.35
                           0
                           813.0
     

     
     
180769
                           gb|AAG07077.1|AE004788_7
                           (AE004788) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           156
                           98.71
                           99.35
                           0
                           813.0
     

     
     
180772
                           gb|AAO58706.1|
                           (AE016875) transcriptional regulator CadR [Pseudomonas syringae pv. tomato str. DC3000]
                           157
                           60.50
                           68.15
                           10
                           435.0
     

     
     
180770
                           gb|AAN70705.1|AE016714_3
                           (AE016793) transcriptional regulator, MerR family [Pseudomonas putida KT2440]
                           157
                           59.87
                           70.70
                           11
                           448.0
     

     
     
180771
                           gb|AAK48830.1|AF333961_1
                           (AF333961) CadR [Pseudomonas putida]
                           157
                           59.87
                           70.06
                           11
                           445.0
     

     






      

          
GC ORFID: 47403How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3689Glimmer Score: 

          
Start: 3527342Stop: 3526872

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3689 translation of PA3689Homolog Bit Score 317.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6908 (ORF: BLASTX 169.0), psyr_15may02_Scaffold10_revised_gene1692 (ORF: BLASTX 102.0), t_PA3689 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGATCGGTGAGCTGGCGAAGAGAACCGGTTGCCCGGTGGAGACCATCCGCTACTACGAGCGCGAAGGC 
CTGTTGCCCGAGCCCGCGCGTAGCGAAGGCAACTATCGGCAATACACCCTGGCGCATGTCGAGCGCCTGTCG 
TTCATCCGTCACTGCCGCTCGCTGGACATGACCCAGGAGGAAATCCGTACCCTGCTGGCGTTGCGCGACCGT 
CCCGAGGCGGATTGCGGCACCGCCAACCGGCTGATCGACGAGCACCTGCATCACGTCGAGGTGCGCATCGCC 
GAACTCCAGGCATTGCGCGAGCAACTGCAGGATCTCGGCTCACGCTGTACGGTCGCCGGCAACAGCCAGGCC 
TGCGGCATCCTCCGCGAACTGGAGCAGCCCGCGCCGCTGTCGCCTATCCCCGAGGAATGCGCCGAGGCCGGG 
CACATGCACGTTCCCGGCGTGCACCGCCGGCATGGCTGA