ViewGene
Locus Name:
GeneID:
Location:

GeneID:4400
TrivialName: PA14_24580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24580
PAO1 Ortholog Locus:PA3056
Sequence Length:477
Protein Length:158
Start: 2148060
Stop: 2148536
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06444.1|AE004730_8 (AE004730) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 156/158 (98%), Positives = 158/158 (100%)
Sequence:
ATGGTAAAGAATCGACGTTTGTTCACTGCTGGCAAGCGCTTGCGCGCCCTGCGCGAGCTGATGGGCTTGAGC
CGTCCGCAGTTCGCCGAGTTGGTGGGGATGACGGCCAAGCGCCTGGAGAACATCGAGAACGAACTGCAGCGC
ATGCACGACGAGGACTTCGAGAAGGTCTGCGGAACCTTCCCGGAGTTCAGCGACTGGATCGCCTATGAAGGC
AGCATCGAGCCGCAGTCGATCGCCTGGAAGGTCGCCGACTCGGCGCAGGCGGCCGCGGTCTACCTGGTGGAG
CGCAACCCGGTGCTGCTGGAGCGGCACGGCATCGACATGCAGGCCTGGCGCGAACGCCACCGTGAGATACGC
GAGGCGCTGCTGGCGGCGGAACAGGCGCCGGAGGCGGAGCCGGCGCCCCTGCAAGAGCCGCCGGAACCCAGG
CGCCAGCGGAAGAGGAAAACGCCCGCGAGCGGCAAGGGCGACTGA
Translation:
MVKNRRLFTAGKRLRALRELMGLSRPQFAELVGMTAKRLENIENELQRMHDEDFEKVCGTFPEFSDWIAYEG
SIEPQSIAWKVADSAQAAAVYLVERNPVLLERHGIDMQAWRERHREIREALLAAEQAPEAEPAPLQEPPEPR
RQRKRKTPASGKGD*
AnnotationID:4406GeneID:4400
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 09:09:20
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3056
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8801




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25944




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32447




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4400_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4400
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6736
                           PA3056_tr
                           translation of PA3056
                           158
                           98.73
                           99.99
                           0
                           811.0
     

     
     
180767
                           gb|AAG06444.1|AE004730_8
                           (AE004730) hypothetical protein PA3056 [Pseudomonas aeruginosa PAO1]
                           158
                           98.73
                           99.99
                           0
                           811.0
     

     
     
6737
                           PA3055_tr
                           translation of PA3055
                           165
                           63.03
                           75.75
                           14
                           531.0
     

     
     
180768
                           gb|AAG06443.1|AE004730_7
                           (AE004730) hypothetical protein PA3055 [Pseudomonas aeruginosa PAO1]
                           165
                           63.03
                           75.75
                           14
                           531.0
     

     






      

          
GC ORFID: 47402How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3056Glimmer Score: 

          
Start: 2805869Stop: 2805393

          
Length: 477


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3056 translation of PA3056Homolog Bit Score 317.0

          
Other Homologs:  t_PA3055 (ORF: BLASTX 207.0), t_PA3056 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTAAAGAATCGACGTTTGTTCACTGCTGGCAAGCGCTTGCGCGCCCTGCGCGAGCTGATGGGCTTGAGC 
CGTCCGCAGTTCGCCGAGTTGGTGGGGATGACGGCCAAGCGCCTGGAGAACATCGAGAACGAACTGCAGCGC 
ATGCACGACGAGGACTTCGAGAAGGTCTGCGGAACCTTCCCGGAGTTCAGCGACTGGATCGCCTATGAAGGC 
AGCATCGAGCCGCAGTCGATCGCCTGGAAGGTCGCCGACTCGGCGCAGGCGGCCGCGGTCTACCTGGTGGAG 
CGCAACCCGGTGCTGCTGGAGCGGCACGGCATCGACATGCAGGCCTGGCGCGAACGCCACCGTGAGATACGC 
GAGGCGCTGCTGGCGGCGGAACAGGCGCCGGAGGCGGAGCCGGCGCCCCTGCAAGAGCCGCCGGAACCCAGG 
CGCCAGCGGAAGAGGAAAACGCCCGCGAGCGGCAAGGGCGACTGA