ViewGene

Locus Name:
GeneID:
Location:

GeneID:440
TrivialName: PA14_46980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46980
PAO1 Ortholog Locus:PA1336
Sequence Length:1902
Protein Length:633
Start: 4184198
Stop: 4186099
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04725.1|AE004563_2 (AE004563) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 632/633 (99%), Positives = 632/633 (99%)
Sequence:
ATGGAATCCCCCGACCCGCCCTGCAGCGTACCTCCGTCACTGACCGTGAAGCCCCGCCTCGTCCGCCAGTTG
CTGCTCCCCATTCCCCTGCTCCTGCTGATGCTCGGCTTCGGCTACGGCGGCTACCGGATCAGCGAGAGCGCC
GGCATCCGTGCCCTCGCCGAGAATGGCGAACGCCAGCTGGAGCTGCATGCGCGGACGGTCGAGAGCGAGATC
AGCAAGTACACCTACCTGCCCAGCCTGCTGGAGCTGGAGCGCAGCGTCAGCCACCTGCTCACCGACCCGACG
CCATACCGGCGCAACCAGGTCAACGCCTACCTCGAAGGCCTCAACCGCCGCGCCGGCAGCCGCGCGGTGTAC
CTGCTGGACACCAACGGCCGGGTCCTGGCCACCAGCAACTGGAGCGACCCGGACAGCTACCTCGGCGAGGAC
CTGTCGTTCCGCGCCTACTGGCAGGACGCGATGAAGGGCAAGCCGGGCCGCTTCTACGGCATCGGCAGCACC
CGCGGCGAGCCGGGCTACTACCTGGCCCACGGCCTGGTCCACGGCGGCCGGATCATCGGCGTGGCGGTGGTC
AAGGTGAAGATGGACGCCCTCGAGGAGCGCTGGGAGAAGGCGCGCCTGGAAGCCTTCGTCAGCGACGAGAAC
GGCATCATCATCCTCTCCAGCAACCCTGCCCTGCGCCTGAAGGCGGTGCGCTCCCTGAGCGCCGACGACAAG
GAGCGCCTGGCGCGCAGCATGCAGTACTACTGGTGGGCGCTGAACGAGTGGCAGCCGCTGCTGCGCGAGCCG
CTGGCCGCCGGAGTGGAGAAGCTCAGTTTCCCCGCCGATGAGCAGCACCCGCGCGGCGAAGCGGTCACCTAC
CTGGCGCAGACCCGCGCGCTGAATGACACGCCGTGGAACCTGACCCTGCTCAGCCCGCTGGAAGACCTGCGC
CGCGACGCGGTGCGCAATGGCATGCTGGCCGCCATCGGTTTCGCCCTCCTGGCCTTCCTGCTGATCGCCTGG
AACGAGCGGCGCAAGGTACTCGCCACCCGCCTCGCCGCGCGCGAGGCGCTGCAACGGGCCAACGGCGAGCTG
GAAGTGAAGATCGCCGAACGCACCGCCGACCTGCAGGCCAGCAACGCACGCCTGACCGCCGAGATCCACGAG
CGCCAGCAGGCCGAGGACACCCTGCGCAAGGCCCAGGACGAACTGGTCCAGGCCGGCAAGCTGGCGGTGATC
GGGCAGATGTCCACCAGCATCGCCCACGAACTCAACCAACCACTGGCGGCGCTGCGTACGCTGTCCGGCAAC
ACCGTGCGCTTCCTCCAGCGCGGCAAACTGGAGACCGCCAGCACCAACCTCGCCACCATCAATGAACTGGTC
GACCGCATGGGCCGCATCACCGCCAGCCTGCGTGCCTTCGCCCGGCGCAGCGACGACGCCGGCCAGGCCAGC
CTGGCCAAGGCGGTGGACGCGGCGCTGCTGATCCTGCACGGGCGCCTGGAGCAGGACCCGCCGACCCTGCAC
CGGCATTTCGACGATGTGCGCCTGGGCATCGACCAGACCCGCCTGGAGCAGATCCTGGTCAACCTGCTGGCC
AACGCCCTCGACGCCATGAGCGGGCAGGCCGACCGCCAGCTCTGGCTGGAAGGCCGGCGCGAGGAGGAGCGC
TACGTCCTGCGCGTGCGCGACAACGGCCCCGGTATCCCGCCGGCGGCGCGCGTCCACCTGTTCGAACCCTTC
TTCACCACCAAGCCCGGCGAACATGGCCTGGGCCTCGGCCTGACCCTCTCGGCCAGCCTGGCCACCGCCGCC
GGCGGCAGCCTCAGCGTGCAGCACCCCGAAAGCGGCGGAACCGCCTTCGAGCTGAGCCTGTCCCTGGTTCCC
GATTCCCCGACTGCGAGTCCCGCCCGATGA
Translation:
MESPDPPCSVPPSLTVKPRLVRQLLLPIPLLLLMLGFGYGGYRISESAGIRALAENGERQLELHARTVESEI
SKYTYLPSLLELERSVSHLLTDPTPYRRNQVNAYLEGLNRRAGSRAVYLLDTNGRVLATSNWSDPDSYLGED
LSFRAYWQDAMKGKPGRFYGIGSTRGEPGYYLAHGLVHGGRIIGVAVVKVKMDALEERWEKARLEAFVSDEN
GIIILSSNPALRLKAVRSLSADDKERLARSMQYYWWALNEWQPLLREPLAAGVEKLSFPADEQHPRGEAVTY
LAQTRALNDTPWNLTLLSPLEDLRRDAVRNGMLAAIGFALLAFLLIAWNERRKVLATRLAAREALQRANGEL
EVKIAERTADLQASNARLTAEIHERQQAEDTLRKAQDELVQAGKLAVIGQMSTSIAHELNQPLAALRTLSGN
TVRFLQRGKLETASTNLATINELVDRMGRITASLRAFARRSDDAGQASLAKAVDAALLILHGRLEQDPPTLH
RHFDDVRLGIDQTRLEQILVNLLANALDAMSGQADRQLWLEGRREEERYVLRVRDNGPGIPPAARVHLFEPF
FTTKPGEHGLGLGLTLSASLATAAGGSLSVQHPESGGTAFELSLSLVPDSPTASPAR*
AnnotationID:449GeneID:440
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 07:07:09
Gene Name:
Confidence Code:3
GeneProduct:putative two-component sensor
Cell Localization:()
Synonyms:PA1336
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative sensor histidine kinase
Functional Category Confidence Code:5
COGs:COG4191
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66692.1|AE016297_6 (AE016778) sensor histidine kinase [Pseudomonas putida KT2440]
          Length = 635

 Score =  858 bits (2217), Expect = 0.0
 Identities = 448/628 (71%), Positives = 514/628 (81%), Gaps = 3/628 (0%)

>gb|AAO57631.1| (AE016871) sensor histidine kinase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 643

 Score =  852 bits (2201), Expect = 0.0
 Identities = 447/624 (71%), Positives = 508/624 (81%), Gaps = 7/624 (1%)

Structural Features:
COG4191, COG4191, Signal transduction histidine kinase regulating 
C4-dicarboxylate transport system 
[Signal transduction mechanisms]
CD-Length = 603 residues,  99.8% aligned
Score =  631 bits (1630), Expect = 0.0
Identities = 293/612 (47%), Positives = 376/612 (61%), Gaps = 16/612 (2%)

Genomic Context:
Comment:
ReferenceID:883
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18025
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37453
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:440_cdd.html
URL:
Homologs By Global Alignment
Gene ID:440

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
756 PA1336_tr translation of PA1336 633 99.84 99.84 0 3202.0
33270 gb|AAG04725.1|AE004563_2 (AE004563) probable two-component sensor [Pseudomonas aeruginosa PAO1] 633 99.84 99.84 0 3202.0
33271 gb|AAN66692.1|AE016297_6 (AE016778) sensor histidine kinase [Pseudomonas putida KT2440] 637 70.48 80.84 6 2221.0
33272 gb|AAO57631.1| (AE016871) sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000] 648 69.44 78.85 20 2198.0
GC ORFID: 43442How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1336Glimmer Score:
Start: 769711Stop: 767810
Length: 1902
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1336 translation of PA1336Homolog Bit Score 1238.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6134 (ORF: BLASTX 857.0), t_PA1336 (ORF: GLIMMER)
GC ORF Sequence
ATGGAATCCCCCGACCCGCCCTGCAGCGTACCTCCGTCACTGACCGTGAAGCCCCGCCTCGTCCGCCAGTTG
CTGCTCCCCATTCCCCTGCTCCTGCTGATGCTCGGCTTCGGCTACGGCGGCTACCGGATCAGCGAGAGCGCC
GGCATCCGTGCCCTCGCCGAGAATGGCGAACGCCAGCTGGAGCTGCATGCGCGGACGGTCGAGAGCGAGATC
AGCAAGTACACCTACCTGCCCAGCCTGCTGGAGCTGGAGCGCAGCGTCAGCCACCTGCTCACCGACCCGACG
CCATACCGGCGCAACCAGGTCAACGCCTACCTCGAAGGCCTCAACCGCCGCGCCGGCAGCCGCGCGGTGTAC
CTGCTGGACACCAACGGCCGGGTCCTGGCCACCAGCAACTGGAGCGACCCGGACAGCTACCTCGGCGAGGAC
CTGTCGTTCCGCGCCTACTGGCAGGACGCGATGAAGGGCAAGCCGGGCCGCTTCTACGGCATCGGCAGCACC
CGCGGCGAGCCGGGCTACTACCTGGCCCACGGCCTGGTCCACGGCGGCCGGATCATCGGCGTGGCGGTGGTC
AAGGTGAAGATGGACGCCCTCGAGGAGCGCTGGGAGAAGGCGCGCCTGGAAGCCTTCGTCAGCGACGAGAAC
GGCATCATCATCCTCTCCAGCAACCCTGCCCTGCGCCTGAAGGCGGTGCGCTCCCTGAGCGCCGACGACAAG
GAGCGCCTGGCGCGCAGCATGCAGTACTACTGGTGGGCGCTGAACGAGTGGCAGCCGCTGCTGCGCGAGCCG
CTGGCCGCCGGAGTGGAGAAGCTCAGTTTCCCCGCCGATGAGCAGCACCCGCGCGGCGAAGCGGTCACCTAC
CTGGCGCAGACCCGCGCGCTGAATGACACGCCGTGGAACCTGACCCTGCTCAGCCCGCTGGAAGACCTGCGC
CGCGACGCGGTGCGCAATGGCATGCTGGCCGCCATCGGTTTCGCCCTCCTGGCCTTCCTGCTGATCGCCTGG
AACGAGCGGCGCAAGGTACTCGCCACCCGCCTCGCCGCGCGCGAGGCGCTGCAACGGGCCAACGGCGAGCTG
GAAGTGAAGATCGCCGAACGCACCGCCGACCTGCAGGCCAGCAACGCACGCCTGACCGCCGAGATCCACGAG
CGCCAGCAGGCCGAGGACACCCTGCGCAAGGCCCAGGACGAACTGGTCCAGGCCGGCAAGCTGGCGGTGATC
GGGCAGATGTCCACCAGCATCGCCCACGAACTCAACCAACCACTGGCGGCGCTGCGTACGCTGTCCGGCAAC
ACCGTGCGCTTCCTCCAGCGCGGCAAACTGGAGACCGCCAGCACCAACCTCGCCACCATCAATGAACTGGTC
GACCGCATGGGCCGCATCACCGCCAGCCTGCGTGCCTTCGCCCGGCGCAGCGACGACGCCGGCCAGGCCAGC
CTGGCCAAGGCGGTGGACGCGGCGCTGCTGATCCTGCACGGGCGCCTGGAGCAGGACCCGCCGACCCTGCAC
CGGCATTTCGACGATGTGCGCCTGGGCATCGACCAGACCCGCCTGGAGCAGATCCTGGTCAACCTGCTGGCC
AACGCCCTCGACGCCATGAGCGGGCAGGCCGACCGCCAGCTCTGGCTGGAAGGCCGGCGCGAGGAGGAGCGC
TACGTCCTGCGCGTGCGCGACAACGGCCCCGGTATCCCGCCGGCGGCGCGCGTCCACCTGTTCGAACCCTTC
TTCACCACCAAGCCCGGCGAACATGGCCTGGGCCTCGGCCTGACCCTCTCGGCCAGCCTGGCCACCGCCGCC
GGCGGCAGCCTCAGCGTGCAGCACCCCGAAAGCGGCGGAACCGCCTTCGAGCTGAGCCTGTCCCTGGTTCCC
GATTCCCCGACTGCGAGTCCCGCCCGATGA