ViewGene
Locus Name:
GeneID:
Location:

GeneID:4399
TrivialName: PA14_27570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27570
PAO1 Ortholog Locus:PA2822
Sequence Length:483
Protein Length:160
Start: 2393262
Stop: 2393744
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06210.1|AE004709_3 (AE004709) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 159/160 (99%), Positives = 160/160 (100%)
Sequence:
ATGATCGATCTGCAGCAATCTGGCGCCGGGCTGGCCGGCTACGCCCTGCTGGCGGCGCAGGCCGAGGCGCTA
TTCGCCGACGAGCGTGATTTCATCGCCAACGCCGCGCAGTTCTCCGCCTTTCTCTTCCATGAGCTGGGCGAC
CTGAACTGGGCCGGCTTCTATCTGAACCGCAACGAGGAACTGGTCCTGGGGCCGTTCCAGGGCAAGGTCGCC
TGCGTCCGCATTCCCTTCTCCAAGGGCGTCTGCGGCGCCGCGGCGCGTACCCGGCTGACCCAGCGGGTCGAC
GACGTCCACGCGTTTCCCGGCCACATCGCCTGCGACAGCGCTTCCAGCAGCGAACTGGTGGTGCCCCTGCTC
AAGGACGGCCGCCTGGTCGCTGTGCTCGATCTGGACAGCCCGAGCGTGGGACGCTTCAGCGCCGAGGACCAG
GCCGGGATCGAAGGCCTGGTGGAGATATTCCTGCGCCTGACGGACTGCTGA
Translation:
MIDLQQSGAGLAGYALLAAQAEALFADERDFIANAAQFSAFLFHELGDLNWAGFYLNRNEELVLGPFQGKVA
CVRIPFSKGVCGAAARTRLTQRVDDVHAFPGHIACDSASSSELVVPLLKDGRLVAVLDLDSPSVGRFSAEDQ
AGIEGLVEIFLRLTDC*
AnnotationID:4405GeneID:4399
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 13:01:19
Gene Name:
Confidence Code:3
GeneProduct:putative GAF domain-containing protein
Cell Localization:()
Synonyms:PA2822
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1956
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67496.1|AE016376_6 (AE016780) GAF domain protein [Pseudomonas putida KT2440]
          Length = 160

 Score =  268 bits (685), Expect = 9e-72
 Identities = 131/160 (81%), Positives = 144/160 (90%)

>gb|AAO55304.1| (AE016862) GAF domain protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 160

 Score =  252 bits (643), Expect = 6e-67
 Identities = 124/160 (77%), Positives = 139/160 (86%)






 
Structural Features:
COG1956, GAF domain-containing protein [Signal transduction mechanisms]
CD-Length = 163 residues,  98.2% aligned
Score =  222 bits (568), Expect = 1e-59
Identities = 94/160 (58%), Positives = 112/160 (70%)








   
Genomic Context:






   
Comment:


















    ReferenceID:8799




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25942




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36231




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4399_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4399
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6735
                           PA2822_tr
                           translation of PA2822
                           160
                           99.37
                           99.99
                           0
                           812.0
     

     
     
180707
                           gb|AAG06210.1|AE004709_3
                           (AE004709) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           160
                           99.37
                           99.99
                           0
                           812.0
     

     
     
180708
                           gb|AAN67496.1|AE016376_6
                           (AE016780) GAF domain protein [Pseudomonas putida KT2440]
                           160
                           81.87
                           90.00
                           0
                           685.0
     

     
     
180709
                           gb|AAO55304.1|
                           (AE016862) GAF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           160
                           77.50
                           86.87
                           0
                           643.0
     

     
     
180710
                           emb|CAE39843.1|
                           (BX640423) conserved hypothetical protein [Bordetella parapertussis]
                           164
                           58.53
                           68.29
                           4
                           456.0
     

     






      

          
GC ORFID: 47401How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2822Glimmer Score: 

          
Start: 2560665Stop: 2560183

          
Length: 483


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2822 translation of PA2822Homolog Bit Score 317.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7764 (ORF: BLASTX 265.0), t_PA2822 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGATCTGCAGCAATCTGGCGCCGGGCTGGCCGGCTACGCCCTGCTGGCGGCGCAGGCCGAGGCGCTA 
TTCGCCGACGAGCGTGATTTCATCGCCAACGCCGCGCAGTTCTCCGCCTTTCTCTTCCATGAGCTGGGCGAC 
CTGAACTGGGCCGGCTTCTATCTGAACCGCAACGAGGAACTGGTCCTGGGGCCGTTCCAGGGCAAGGTCGCC 
TGCGTCCGCATTCCCTTCTCCAAGGGCGTCTGCGGCGCCGCGGCGCGTACCCGGCTGACCCAGCGGGTCGAC 
GACGTCCACGCGTTTCCCGGCCACATCGCCTGCGACAGCGCTTCCAGCAGCGAACTGGTGGTGCCCCTGCTC 
AAGGACGGCCGCCTGGTCGCTGTGCTCGATCTGGACAGCCCGAGCGTGGGACGCTTCAGCGCCGAGGACCAG 
GCCGGGATCGAAGGCCTGGTGGAGATATTCCTGCGCCTGACGGACTGCTGA