ViewGene
Locus Name:
GeneID:
Location:

GeneID:4396
TrivialName: PA14_41450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41450
PAO1 Ortholog Locus:PA1788
Sequence Length:468
Protein Length:155
Start: 3696648
Stop: 3696181
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05177.1|AE004604_7 (AE004604) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/155 (99%), Positives = 154/155 (99%)
Sequence:
ATGTCTTCGCAAAGAATCAAAACCCCCTGCGTAGGGCTTTGCTCCACGGTATACGGCGACCTGGTATGCCGT
GGCTGCAAGCGTTTCCACCATGAGGTGGTCAACTGGAACCTCTACGACGCCGAGGAAAAGCGGGCTGTCTGG
AGTCGCCTTGAGCAGTTGCTGGCCCAGGTGATGGCCGCCAAGCTGGAAGTCTTCGACGCCGCGCGCCTGCGC
CTGCAACTGGAGCAGCGGCAGATCCGCTTCGTCCCCGAGCAGTCTCCCTATTGCTGGGCCTACCAGTTGATC
GCCCGCGGTTCCCGGCTGATCAACCAGATCGAAGCCTACGGCGTGGCACTGCTGCCGGAATTCCGCGACTGG
AGCCTGCCGGACCTGCGCGATGCCATCGACCGGGAATTCTTCCTGCTGTCGGAAGCGCATTACCAGCGCTAC
ATCGCGCCCTCGTTCCTGCAGGCGATCGACAGATAG
Translation:
MSSQRIKTPCVGLCSTVYGDLVCRGCKRFHHEVVNWNLYDAEEKRAVWSRLEQLLAQVMAAKLEVFDAARLR
LQLEQRQIRFVPEQSPYCWAYQLIARGSRLINQIEAYGVALLPEFRDWSLPDLRDAIDREFFLLSEAHYQRY
IAPSFLQAIDR*
AnnotationID:4402GeneID:4396
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 12:12:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1788
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3313
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3313, COG3313, Predicted Fe-S protein
CD-Length = 74 residues,  95.9% aligned
Score = 76.2 bits (187), Expect = 1e-15
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 7/81 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8793




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25936




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37101




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4396_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4396
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6732
                           PA1788_tr
                           translation of PA1788
                           155
                           99.35
                           99.35
                           0
                           812.0
     

     
     
180689
                           gb|AAG05177.1|AE004604_7
                           (AE004604) hypothetical protein PA1788 [Pseudomonas aeruginosa PAO1]
                           155
                           99.35
                           99.35
                           0
                           812.0
     

     
     
180690
                           gb|AAO57220.1|
                           (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           158
                           76.58
                           85.44
                           5
                           651.0
     

     
     
180691
                           gb|AAN67953.1|AE016428_1
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           174
                           70.11
                           75.86
                           21
                           649.0
     

     






      

          
GC ORFID: 47398How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1788Glimmer Score: 

          
Start: 1257261Stop: 1257728

          
Length: 468


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1788 translation of PA1788Homolog Bit Score 317.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene755 (ORF: BLASTX 259.0), t_PA1788 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTTCGCAAAGAATCAAAACCCCCTGCGTAGGGCTTTGCTCCACGGTATACGGCGACCTGGTATGCCGT 
GGCTGCAAGCGTTTCCACCATGAGGTGGTCAACTGGAACCTCTACGACGCCGAGGAAAAGCGGGCTGTCTGG 
AGTCGCCTTGAGCAGTTGCTGGCCCAGGTGATGGCCGCCAAGCTGGAAGTCTTCGACGCCGCGCGCCTGCGC 
CTGCAACTGGAGCAGCGGCAGATCCGCTTCGTCCCCGAGCAGTCTCCCTATTGCTGGGCCTACCAGTTGATC 
GCCCGCGGTTCCCGGCTGATCAACCAGATCGAAGCCTACGGCGTGGCACTGCTGCCGGAATTCCGCGACTGG 
AGCCTGCCGGACCTGCGCGATGCCATCGACCGGGAATTCTTCCTGCTGTCGGAAGCGCATTACCAGCGCTAC 
ATCGCGCCCTCGTTCCTGCAGGCGATCGACAGATAG