ViewGene
Locus Name:
GeneID:
Location:

GeneID:4395
TrivialName: PA14_51930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51930
PAO1 Ortholog Locus:PA0953
Sequence Length:465
Protein Length:154
Start: 4611566
Stop: 4611102
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04342.1|AE004529_8 (AE004529) probable thioredoxin [Pseudomonas aeruginosa PAO1]
Identities = 154/154 (100%), Positives = 154/154 (100%)
Sequence:
ATGGGGAGTTGGCTACGCCCGCTGGGCGCTGCTGCGGTGTTGTTTCTCGCGGGCTGTTCGGCGGATTACGGA
GTCGACCAGGACGGGCGTCCTGTCGCTGCGGAGCAGTTGGACGGGCATTGGCTGGTGGTCAATTACTGGGCT
GACTGGTGCGCGCCCTGCCGGACCGAGATTCCGGAGATGAATCGCCTTGCGCAGGTGCTGGAAGGGCAGGGC
GGGCGCGTCATTGGCGTGAATTTCGATGGCTTGCGCGATGCCGAGTTGAAGAAGTCGGCCGATGGCATGGGG
ATTCGCTTCACCGTGCTGGCCGATGATCCGGCGCCTCGCTTCAAGCTCCCTCGCAGCGAAGCGTTGCCTGTC
ACCTATATCGTCGATGCTCGGGGGGAAATGCGTCAGCGTCTGCTGGGCGAGCAGACGGCCGATGGCATATTG
AAACAGCTCGAGGCTTTGCGGGAGGGACGCTGA
Translation:
MGSWLRPLGAAAVLFLAGCSADYGVDQDGRPVAAEQLDGHWLVVNYWADWCAPCRTEIPEMNRLAQVLEGQG
GRVIGVNFDGLRDAELKKSADGMGIRFTVLADDPAPRFKLPRSEALPVTYIVDARGEMRQRLLGEQTADGIL
KQLEALREGR*
AnnotationID:4401GeneID:4395
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 15:03:38
Gene Name:
Confidence Code:3
GeneProduct:probable thioredoxin
Cell Localization:()
Synonyms:PA0953, helX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational 
modification, protein turnover, chaperones / Energy production and conversion]
     CD-Length = 127 residues,  85.8% aligned
     Score = 61.1 bits (146), Expect = 5e-11






   
Genomic Context:






   
Comment:


















    ReferenceID:8791




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25934




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4395
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6731
                           PA0953_tr
                           translation of PA0953
                           154
                           99.99
                           99.99
                           0
                           811.0
     

     
     
180686
                           gb|AAG04342.1|AE004529_8
                           (AE004529) probable thioredoxin [Pseudomonas aeruginosa PAO1]
                           154
                           99.99
                           99.99
                           0
                           811.0
     

     
     
180687
                           gb|AAN67267.1|AE016353_7
                           (AE016780) thioredoxin, putative [Pseudomonas putida KT2440]
                           158
                           55.06
                           72.78
                           8
                           474.0
     

     
     
180688
                           gb|AAO55208.1|
                           (AE016861) thioredoxin, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           159
                           54.71
                           74.84
                           9
                           465.0
     

     






      

          
GC ORFID: 47397How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0953Glimmer Score: 

          
Start: 342341Stop: 342805

          
Length: 465


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0953 translation of PA0953Homolog Bit Score 317.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6449 (ORF: BLASTX 181.0), t_PA0953 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGGAGTTGGCTACGCCCGCTGGGCGCTGCTGCGGTGTTGTTTCTCGCGGGCTGTTCGGCGGATTACGGA 
GTCGACCAGGACGGGCGTCCTGTCGCTGCGGAGCAGTTGGACGGGCATTGGCTGGTGGTCAATTACTGGGCT 
GACTGGTGCGCGCCCTGCCGGACCGAGATTCCGGAGATGAATCGCCTTGCGCAGGTGCTGGAAGGGCAGGGC 
GGGCGCGTCATTGGCGTGAATTTCGATGGCTTGCGCGATGCCGAGTTGAAGAAGTCGGCCGATGGCATGGGG 
ATTCGCTTCACCGTGCTGGCCGATGATCCGGCGCCTCGCTTCAAGCTCCCTCGCAGCGAAGCGTTGCCTGTC 
ACCTATATCGTCGATGCTCGGGGGGAAATGCGTCAGCGTCTGCTGGGCGAGCAGACGGCCGATGGCATATTG 
AAACAGCTCGAGGCTTTGCGGGAGGGACGCTGA