ViewGene
Locus Name:
GeneID:
Location:

GeneID:4394
TrivialName: PA14_53810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53810
PAO1 Ortholog Locus:PA0808
Sequence Length:474
Protein Length:157
Start: 4771752
Stop: 4771279
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04197.1|AE004516_2 (AE004516) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 156/157 (99%), Positives = 156/157 (99%)
Sequence:
ATGACTGCCGTCGCACAGGTCGTCGCCAAGGCGGAAATGCTGATCCGCCGCCCCATCGCCGAGGTCTTCGAA
GCCTTCGTCGATCCGGCCATCACCGCCAGGTTCTGGTTCAGCCGCGGCGATGCCCGCCTCGAAGCCGGGAAA
CGGCTGCGCTGGCACTGGGACATGTACGGGGTTTCCCAGGAAATCGAAGTGAAGGACCTGCAGACGAACCGC
CGCATCCTCATCGAATGGCCGAATGGCGACAGCAACCCTTCCCAGGTGGAGTGGCTGTTCGAGGAACTGCCC
GGCGCCGGGACCTTCGTCAGCATCCGCAACAGCGGTTTCGTTGGCACCCCGGAAGAAGTCATCCCGCGGGTG
GTCGACGCCACCGAAGGTTTCACCCTGGTGCTGGCCGGACTCAAGGCCTGCCTGGAGCATGGCATCGCCTTG
AACCTGGTGGCCGACCGTTTTCCCCGCGGCCTCGATGGCTGA
Translation:
MTAVAQVVAKAEMLIRRPIAEVFEAFVDPAITARFWFSRGDARLEAGKRLRWHWDMYGVSQEIEVKDLQTNR
RILIEWPNGDSNPSQVEWLFEELPGAGTFVSIRNSGFVGTPEEVIPRVVDATEGFTLVLAGLKACLEHGIAL
NLVADRFPRGLDG*
AnnotationID:4400GeneID:4394
AnnotatorUID: danlee
Modification Date/Time: 2004-04-20 15:03:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0808
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3832, Uncharacterized conserved protein [Function unknown]. Score: 85.1, 7e-18
pfam05146, DUF704, Aha1 domain, function unknown. Score: 80.9, 1e-16







   
Genomic Context:






   
Comment:


















    ReferenceID:8789




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25932




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4394
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6730
                           PA0808_tr
                           translation of PA0808
                           157
                           99.36
                           99.36
                           0
                           813.0
     

     
     
180684
                           gb|AAG04197.1|AE004516_2
                           (AE004516) hypothetical protein PA0808 [Pseudomonas aeruginosa PAO1]
                           157
                           99.36
                           99.36
                           0
                           813.0
     

     
     
180685
                           dbj|BAB50726.1|
                           (AP003003) hypothetical protein [Mesorhizobium loti]
                           158
                           48.73
                           65.18
                           4
                           418.0
     

     






      

          
GC ORFID: 47396How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0808Glimmer Score: 

          
Start: 182155Stop: 182628

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0808 translation of PA0808Homolog Bit Score 317.0

          
Other Homologs:  t_PA0808 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGCCGTCGCACAGGTCGTCGCCAAGGCGGAAATGCTGATCCGCCGCCCCATCGCCGAGGTCTTCGAA 
GCCTTCGTCGATCCGGCCATCACCGCCAGGTTCTGGTTCAGCCGCGGCGATGCCCGCCTCGAAGCCGGGAAA 
CGGCTGCGCTGGCACTGGGACATGTACGGGGTTTCCCAGGAAATCGAAGTGAAGGACCTGCAGACGAACCGC 
CGCATCCTCATCGAATGGCCGAATGGCGACAGCAACCCTTCCCAGGTGGAGTGGCTGTTCGAGGAACTGCCC 
GGCGCCGGGACCTTCGTCAGCATCCGCAACAGCGGTTTCGTTGGCACCCCGGAAGAAGTCATCCCGCGGGTG 
GTCGACGCCACCGAAGGTTTCACCCTGGTGCTGGCCGGACTCAAGGCCTGCCTGGAGCATGGCATCGCCTTG 
AACCTGGTGGCCGACCGTTTTCCCCGCGGCCTCGATGGCTGA