ViewGene
Locus Name:
GeneID:
Location:

GeneID:4393
TrivialName: PA14_71120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71120
PAO1 Ortholog Locus:PA5385
Sequence Length:480
Protein Length:159
Start: 6336750
Stop: 6336271
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08770.1|AE004951_4 (AE004951) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 156/159 (98%), Positives = 157/159 (98%)
Sequence:
ATGAGCCAAGCCCTGACGACCTACGAGACGCCGGTCCTGCCCGAGTGGGTGGACTACAACGGCCACTTGCGC
GATGCCTTCTACCTACTGGTGTTCAGCTACGCCACCGATGCGCTGATGGCGCATATCGGCCTGGACAGCCAG
AACCGCGACGCCAGCGGACACTCGCTGTTCACCCTGGAATGCCACCTGAACTTCCTCCACGAGGTGAAGGAG
GGCGCCAGGGTCGAGGTGCGCACGCAACTGCTCGGTCACGATCGCAAGCGCCTGCATATCCACCATGCCCTG
TACCTGCCTGGCAGCGGGCAGGCGCTGGCGCTGAGCGAGCAGATGCTGCTCCACGTCAGCCTCGACGGCCCG
CGCTCGGTGCCGTTCGAAGGCGAGGTGCTGGCGCGGGTCGAGGCGCTCGCCGAGGCACATCGCGCGCTCCCC
GTGCCGGAAGGTGTCGGTCGGGTGATCGGCCTGCCGCCGCTGCGCTGA
Translation:
MSQALTTYETPVLPEWVDYNGHLRDAFYLLVFSYATDALMAHIGLDSQNRDASGHSLFTLECHLNFLHEVKE
GARVEVRTQLLGHDRKRLHIHHALYLPGSGQALALSEQMLLHVSLDGPRSVPFEGEVLARVEALAEAHRALP
VPEGVGRVIGLPPLR*
AnnotationID:4399GeneID:4393
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:20
Gene Name:
Confidence Code:4
GeneProduct:putative thioesterase
Cell Localization:()
Synonyms:PA5385
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0824
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0824, FcbC, Predicted thioesterase 
CD-Length = 137 residues, 100.0% aligned
Score =  100 bits (251), Expect = 6e-23
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 2/139 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8787




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25930




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34709




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4393_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4393
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6729
                           PA5385_tr
                           translation of PA5385
                           159
                           98.11
                           98.74
                           0
                           816.0
     

     
     
180678
                           gb|AAG08770.1|AE004951_4
                           (AE004951) hypothetical protein PA5385 [Pseudomonas aeruginosa PAO1]
                           159
                           98.11
                           98.74
                           0
                           816.0
     

     
     
180679
                           gb|AAN65932.1|AE016221_4
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           159
                           57.23
                           69.18
                           3
                           467.0
     

     
     
180683
                           emb|CAC37898.1|
                           (AL939127) conserved hypothetical protein [Streptomyces coelicolor A3(2)]
                           167
                           38.32
                           53.89
                           16
                           284.0
     

     
     
180681
                           gb|AAL46032.1|
                           (AE008956) 3-hydroxyacyl-CoA dehydrogenase [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           489
                           13.90
                           19.01
                           335
                           293.0
     

     






      

          
GC ORFID: 47395How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5385Glimmer Score: 

          
Start: 5600439Stop: 5599960

          
Length: 480


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5385 translation of PA5385Homolog Bit Score 318.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7152 (ORF: BLASTX 194.0), t_PA5385 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAAGCCCTGACGACCTACGAGACGCCGGTCCTGCCCGAGTGGGTGGACTACAACGGCCACTTGCGC 
GATGCCTTCTACCTACTGGTGTTCAGCTACGCCACCGATGCGCTGATGGCGCATATCGGCCTGGACAGCCAG 
AACCGCGACGCCAGCGGACACTCGCTGTTCACCCTGGAATGCCACCTGAACTTCCTCCACGAGGTGAAGGAG 
GGCGCCAGGGTCGAGGTGCGCACGCAACTGCTCGGTCACGATCGCAAGCGCCTGCATATCCACCATGCCCTG 
TACCTGCCTGGCAGCGGGCAGGCGCTGGCGCTGAGCGAGCAGATGCTGCTCCACGTCAGCCTCGACGGCCCG 
CGCTCGGTGCCGTTCGAAGGCGAGGTGCTGGCGCGGGTCGAGGCGCTCGCCGAGGCACATCGCGCGCTCCCC 
GTGCCGGAAGGTGTCGGTCGGGTGATCGGCCTGCCGCCGCTGCGCTGA