ViewGene
Locus Name:
GeneID:
Location:

GeneID:4392
TrivialName: PA14_60750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60750
PAO1 Ortholog Locus:PA4590
Sequence Length:489
Protein Length:162
Start: 5413657
Stop: 5413169
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07978.1|AE004872_9 (AE004872) protein activator [Pseudomonas aeruginosa PAO1]
Identities = 162/162 (100%), Positives = 162/162 (100%)
Sequence:
ATGAAATCCATCAAGTCCCTGCCGTCCTTTGCTGCTCTTGCTCTCTGCCTGAGCGTTTCGTCCATGGCCAGC
GCGGCCACCATCACCCCGGTCAACTCGGCCTTCACCGCACCTGGCACCATCAGCGTGAGCTCGCCGGCGTCG
CTCAATCTGCCAGTGACCTGCAACATCACCTTCAAGGGCAAGACCGCCGCCGATGGCTCCTATGCCTCGATC
GACAGCGTCACCGTCAGCGGCAGCAACACCCTGTGCAGCGTGCCGCAGATGACCGGCCTGCCGTGGAAGCTG
ACCGTTTCCAGCACCACTGCCGGCAAGGTCGATGGCGTCGGCTTCAAGATTCTCTCCTCTACCTGTGGCCCG
AGCACCGTCAACGGTTCCTGGAGCAACGCCACCAACACCCTCAGCGCCAGCAATCAGTCGCTGGCAGGCAAC
TGCAAGATCAACAGCCTGAGCGTGAAGCCGACCCCGGCCTTCGTAGTCAACCCGTAA
Translation:
MKSIKSLPSFAALALCLSVSSMASAATITPVNSAFTAPGTISVSSPASLNLPVTCNITFKGKTAADGSYASI
DSVTVSGSNTLCSVPQMTGLPWKLTVSSTTAGKVDGVGFKILSSTCGPSTVNGSWSNATNTLSASNQSLAGN
CKINSLSVKPTPAFVVNP*
AnnotationID:4398GeneID:4392
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 06:06:50
Gene Name:pra
Confidence Code:1
GeneProduct:putative activator of alkane oxidation
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC34853.1| (AJ009579) protein activator of alkane oxidation (PraB)
           [Pseudomonas fluorescens]
          Length = 168

 Score =  154 bits (389), Expect = 2e-37
 Identities = 85/165 (51%), Positives = 111/165 (67%), Gaps = 11/165 (6%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8785




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25928




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33212




  
Author/Investigator(s):
        Chopade BA, Shankar S, Sundin GW, Mukhopadhyay S, Chakrabarty AM.





  
Title:
        Characterization of membrane-associated Pseudomonas aeruginosa Ras-like protein Pra, a GTP-binding protein that forms complexes with truncated nucleoside diphosphate kinase and pyruvate kinase to modulate GTP synthesis.




  
PubMed:
        9079902


MedLine:
        




    
Source:
J Bacteriol. 1997 Apr;179(7):2181-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9079902

















    ReferenceID:33213




  
Author/Investigator(s):
        Hardegger M, Koch AK, Ochsner UA, Fiechter A, Reiser J.





  
Title:
        Cloning and heterologous expression of a gene encoding an alkane-induced extracellular protein involved in alkane assimilation from Pseudomonas aeruginosa.




  
PubMed:
        7986042


MedLine:
        




    
Source:
Appl Environ Microbiol. 1994 Oct;60(10):3679-87.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7986042









           
Homologs By Global Alignment 

           

       



     
Gene ID:4392
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6728
                           PA4590_tr
                           translation of PA4590
                           162
                           99.99
                           99.99
                           0
                           815.0
     

     
     
180674
                           gb|AAG07978.1|AE004872_9
                           (AE004872) protein activator [Pseudomonas aeruginosa PAO1]
                           162
                           99.99
                           99.99
                           0
                           815.0
     

     
     
180675
                           gb|AAA67847.1|
                           (L08966) protein activator [Pseudomonas aeruginosa]
                           162
                           99.99
                           99.99
                           0
                           815.0
     

     
     
180677
                           emb|CAC34853.1|
                           (AJ009579) protein activator of alkane oxidation (PraB) [Pseudomonas fluorescens]
                           172
                           50.58
                           66.27
                           14
                           400.0
     

     
     
180676
                           gb|AAL79770.1|
                           (AF090329) putative activator of alkane oxidation ORF2 [Pseudomonas fluorescens]
                           168
                           49.40
                           65.47
                           10
                           400.0
     

     






      

          
GC ORFID: 47394How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4590Glimmer Score: 

          
Start: 4677337Stop: 4676849

          
Length: 489


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4590 translation of PA4590Homolog Bit Score 318.0

          
Other Homologs:  t_PA4590 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAATCCATCAAGTCCCTGCCGTCCTTTGCTGCTCTTGCTCTCTGCCTGAGCGTTTCGTCCATGGCCAGC 
GCGGCCACCATCACCCCGGTCAACTCGGCCTTCACCGCACCTGGCACCATCAGCGTGAGCTCGCCGGCGTCG 
CTCAATCTGCCAGTGACCTGCAACATCACCTTCAAGGGCAAGACCGCCGCCGATGGCTCCTATGCCTCGATC 
GACAGCGTCACCGTCAGCGGCAGCAACACCCTGTGCAGCGTGCCGCAGATGACCGGCCTGCCGTGGAAGCTG 
ACCGTTTCCAGCACCACTGCCGGCAAGGTCGATGGCGTCGGCTTCAAGATTCTCTCCTCTACCTGTGGCCCG 
AGCACCGTCAACGGTTCCTGGAGCAACGCCACCAACACCCTCAGCGCCAGCAATCAGTCGCTGGCAGGCAAC 
TGCAAGATCAACAGCCTGAGCGTGAAGCCGACCCCGGCCTTCGTAGTCAACCCGTAA