ViewGene
Locus Name:
GeneID:
Location:

GeneID:4391
TrivialName: PA14_70740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70740
PAO1 Ortholog Locus:PA5359
Sequence Length:456
Protein Length:151
Start: 6299593
Stop: 6299138
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08744.1|AE004947_14 (AE004947) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 151/151 (100%), Positives = 151/151 (100%)
Sequence:
ATGCTCAACAGGTTCCGGTGCCGTCCCTGCGGGCGGCGAACGCTCCACCTGAAGACACAGGAGAGAGACGCG
ATGAACAGAATCCACCTGGCGCTGGGTCTGGCGCTGGCCCTGCCGGCGTTCGCCGCGCTGGCCCAGGAAACG
GTGGCGCCGGCCACCGAGAAGGACGGCGTGCTGGTCGATGGCAAGGGCATGACGCTCTATACCTACGACAAG
GACAGCGAAGGGCAATCCGCCTGTTCCGGGCAGTGCGCGAAGAACTGGCCGCCGCTGGCAGCGGCCCAGGGA
GCGCAGGCCAGCGGCGACTGGAGCCTGGTCGCTCGCGAGGACGGCACCCAGCAGTGGGCCTACTACGGCAAG
CCCCTTTATACCTTCATCCAGGACAAGAAGCCTGGCGACAAGAACGGTGACGGCAAGATGGGCGCCTGGCAC
GTCGCCCAGCCGGACATGGACTAG
Translation:
MLNRFRCRPCGRRTLHLKTQERDAMNRIHLALGLALALPAFAALAQETVAPATEKDGVLVDGKGMTLYTYDK
DSEGQSACSGQCAKNWPPLAAAQGAQASGDWSLVAREDGTQQWAYYGKPLYTFIQDKKPGDKNGDGKMGAWH
VAQPDMD*
AnnotationID:4397GeneID:4391
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 07:07:36
Gene Name:
Confidence Code:3
GeneProduct:putative exported protein
Cell Localization:()
Synonyms:PA5359
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03640
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE31799.1| (BX640441) putative exported protein [Bordetella bronchiseptica]
          Length = 122

 Score =  153 bits (387), Expect = 3e-37
 Identities = 74/118 (62%), Positives = 87/118 (73%), Gaps = 3/118 (2%)

>emb|CAE36386.1| (BX640426) putative exported protein [Bordetella parapertussis]
          Length = 122

 Score =  153 bits (387), Expect = 3e-37
 Identities = 74/118 (62%), Positives = 87/118 (73%), Gaps = 3/118 (2%)

>emb|CAE43187.1| (BX640419) putative exported protein [Bordetella pertussis]
          Length = 122

 Score =  153 bits (387), Expect = 3e-37
 Identities = 74/118 (62%), Positives = 87/118 (73%), Gaps = 3/118 (2%)






 
Structural Features:
pfam03640, Lipoprotein_15, Secreted repeat of unknown function. 
This family occurs as tandem repeats in a set of lipoproteins.
CD-Length = 51 residues, 100.0% aligned
Score = 60.0 bits (145), Expect = 1e-10
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 3/51 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8783




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25926




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34711




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4391_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4391
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6727
                           PA5359_tr
                           translation of PA5359
                           151
                           99.99
                           99.99
                           0
                           817.0
     

     
     
180656
                           gb|AAG08744.1|AE004947_14
                           (AE004947) hypothetical protein PA5359 [Pseudomonas aeruginosa PAO1]
                           151
                           99.99
                           99.99
                           0
                           817.0
     

     
     
180657
                           emb|CAE31799.1|
                           (BX640441) putative exported protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           152
                           50.00
                           59.21
                           31
                           387.0
     

     
     
180658
                           emb|CAE36386.1|
                           (BX640426) putative exported protein [Bordetella parapertussis]
                           152
                           50.00
                           59.21
                           31
                           387.0
     

     
     
180659
                           emb|CAE43187.1|
                           (BX640419) putative exported protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           152
                           50.00
                           59.21
                           31
                           387.0
     

     






      

          
GC ORFID: 47393How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5359Glimmer Score: 

          
Start: 5563282Stop: 5562827

          
Length: 456


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5359 translation of PA5359Homolog Bit Score 319.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1615 (ORF: BLASTX 132.0), t_PA5359 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCAACAGGTTCCGGTGCCGTCCCTGCGGGCGGCGAACGCTCCACCTGAAGACACAGGAGAGAGACGCG 
ATGAACAGAATCCACCTGGCGCTGGGTCTGGCGCTGGCCCTGCCGGCGTTCGCCGCGCTGGCCCAGGAAACG 
GTGGCGCCGGCCACCGAGAAGGACGGCGTGCTGGTCGATGGCAAGGGCATGACGCTCTATACCTACGACAAG 
GACAGCGAAGGGCAATCCGCCTGTTCCGGGCAGTGCGCGAAGAACTGGCCGCCGCTGGCAGCGGCCCAGGGA 
GCGCAGGCCAGCGGCGACTGGAGCCTGGTCGCTCGCGAGGACGGCACCCAGCAGTGGGCCTACTACGGCAAG 
CCCCTTTATACCTTCATCCAGGACAAGAAGCCTGGCGACAAGAACGGTGACGGCAAGATGGGCGCCTGGCAC 
GTCGCCCAGCCGGACATGGACTAG