ViewGene
Locus Name:
GeneID:
Location:

GeneID:4390
TrivialName: PA14_13420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13420
PAO1 Ortholog Locus:PA3902
Sequence Length:462
Protein Length:153
Start: 1153904
Stop: 1154365
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07289.1|AE004807_8 (AE004807) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 153/153 (100%), Positives = 153/153 (100%)
Sequence:
ATGAACGGAGTATCCAGACTGCTCTCCCTGGCGTTGCTGGGCGCGGCGCTGCACTGGGCGCCGGCGCAGGCC
GAGGAGCAGCCGCGGCTGTTCGAACTGCTCGGCCAGCCCGGCTACAAGGCCACCTGGCATGCCATGTTCAAG
GGCGAGAGCGACGTGCCGAAATGGGTTTCCGACGCCAGCGGCCCGAGTTCCCCGTCCACCAGCCTGAGCCTG
GAGGGCCAGCCCTACGTCCTGGCCAACAGTTGCAAACCCCACGATTGCGGCAACAACCGCCTGCTGGTGGCG
TTCCGTGGCGACAAGAGTGCCGCCTACGGGCTGCAGGTGAGCCTGCCGGACGAGCCCGCCGAAGTCATGCAG
ACGCCGAGCAAGTACGCCACCTATCGCTGGTACGGCGAACCCTCCAGGCAGGTCCGCGAGCTGCTGATGAAA
CAGTTGGAGAGCGATCCGAACTGGAAGTGA
Translation:
MNGVSRLLSLALLGAALHWAPAQAEEQPRLFELLGQPGYKATWHAMFKGESDVPKWVSDASGPSSPSTSLSL
EGQPYVLANSCKPHDCGNNRLLVAFRGDKSAAYGLQVSLPDEPAEVMQTPSKYATYRWYGEPSRQVRELLMK
QLESDPNWK*
AnnotationID:4396GeneID:4390
AnnotatorUID: urbach
Modification Date/Time: 2004-03-10 18:06:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8781




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25924




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4390
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6726
                           PA3902_tr
                           translation of PA3902
                           153
                           99.99
                           99.99
                           0
                           817.0
     

     
     
180652
                           gb|AAG07289.1|AE004807_8
                           (AE004807) hypothetical protein PA3902 [Pseudomonas aeruginosa PAO1]
                           153
                           99.99
                           99.99
                           0
                           817.0
     

     
     
180655
                           gb|AAQ58532.1|
                           (AE016912) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           158
                           40.50
                           56.32
                           6
                           307.0
     

     
     
180654
                           emb|CAC92108.1|
                           (AJ414154) putative exported protein [Yersinia pestis CO92]
                           155
                           38.06
                           56.77
                           3
                           320.0
     

     
     
180653
                           gb|AAM84949.1|AE013740_1
                           (AE013740) hypothetical [Yersinia pestis KIM]
                           172
                           36.04
                           53.48
                           22
                           323.0
     

     






      

          
GC ORFID: 47392How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3902Glimmer Score: 

          
Start: 3800034Stop: 3799573

          
Length: 462


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3902 translation of PA3902Homolog Bit Score 319.0

          
Other Homologs:  t_PA3902 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGGAGTATCCAGACTGCTCTCCCTGGCGTTGCTGGGCGCGGCGCTGCACTGGGCGCCGGCGCAGGCC 
GAGGAGCAGCCGCGGCTGTTCGAACTGCTCGGCCAGCCCGGCTACAAGGCCACCTGGCATGCCATGTTCAAG 
GGCGAGAGCGACGTGCCGAAATGGGTTTCCGACGCCAGCGGCCCGAGTTCCCCGTCCACCAGCCTGAGCCTG 
GAGGGCCAGCCCTACGTCCTGGCCAACAGTTGCAAACCCCACGATTGCGGCAACAACCGCCTGCTGGTGGCG 
TTCCGTGGCGACAAGAGTGCCGCCTACGGGCTGCAGGTGAGCCTGCCGGACGAGCCCGCCGAAGTCATGCAG 
ACGCCGAGCAAGTACGCCACCTATCGCTGGTACGGCGAACCCTCCAGGCAGGTCCGCGAGCTGCTGATGAAA 
CAGTTGGAGAGCGATCCGAACTGGAAGTGA