ViewGene
Locus Name:
GeneID:
Location:

GeneID:439
TrivialName: PA14_26640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26640
PAO1 Ortholog Locus:PA2893
Sequence Length:1827
Protein Length:608
Start: 2321990
Stop: 2320164
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06281.1|AE004715_7 (AE004715) probable very-long-chain acyl-CoA synthetase [Pseudomonas aeruginosa PAO1]
Identities = 607/608 (99%), Positives = 607/608 (99%)
Sequence:
ATGACCCACGCCGACCTGATCACTTTCAACCGTTTCGTTGCCCGCCTGCCTGCCACCTTCGGCCGCGTGCCG
CGCATGCTGCGCGGCCTGTACTACACCGCGATCCGTAACCGCGAGAAGAGCCTGTCCCTGGGCTGGGCGCTG
GAGCGCGCGGCACGCCTGTACCCGGACAACCCGGCGGTGCTCGACGGCCAGCGGCGGATCAGCTACGCCCTG
TTCAACGGCTGGGCCAATCGCCTGGCGCGCGCCTTCAAGGCCGAGGGCGTAGGCCACGGCAGCGTGGTCGCG
GTGATGCTGGAGAACCGCGTCGAGCTGCTGGCGATCCTCGCCGCCCTGGCCAAGCTCGGCGCCATCGGCGCA
CTGGTCAACACCACCCAGCGCGGCAAGGTCCTGGTGCACAGCCTGAACCTGGTGAAGCCCGGCCACTTCGTG
GTCGGCGAAGAGTTGCGCGAGGTGTTCGAGGAAGTCCGCCAGGAGGTGCTCGGCAACGCCGGCCATTGCTAC
TGGGTCGACGACGGCGACACCCTCGGCGATCCCGGCTCGCCGCCGATGGGCTGGCGCAACCTGATGCGCCTG
GCCCAGGGACAGACCTCGGAGAACCTCGAGGACACCGGCAGGGTGCGGCTCAAGGACTCCTGCTTCTACATC
TACACCTCCGGCACCACCGGCCTGCCGAAAGCCTCGATCATGAGCCACGGCAAGTGGATCAAGGCCTACGGC
GGCTTCGGCCATTCCGGCCTGGGCCTGGGCCGCGACGACGTGCTCTACCTGACCCTGCCCTGCTACCACAAC
AACGCCGTGACCGTCTGCTGGAGCGCGGCGCTCGCCGGCGGCGCGGCCATGGCCCTGCGCCGCAAGTTCTCC
GCCAGCGGTTTCTGGAAGGACGTGCAGCACTACCGGGCGACCTGCTTCGGCTACATCGGCGAACTCTGCCGC
TACCTGCTGAACCAGCCGCCGTGCGCCGAGGAACGCGGCAATAGCCTGACCTGCATGATCGGCAACGGCCTG
CGCCCGTCGATCTGGGCCGAGTTCAAGCAACGCTTCGAGATCCAGCGGATCACCGAGTTCTACGCTTCCAGC
GAAGGCAACATCGGCTTCACCAACGTATTCAATTTCGACAATACGGTGGGCTTCTCCCCAGCCACCTACGCC
ATCGTCCGCTACGACCTGGAGAACGACCGCCCGGTGCGCGACGCCAAGGGCTTCATGGAGAAGGTCGGCAAG
GGCGAGGTCGGCCTGCTGATCAGCGAGATCAGCGCGAAGTGGCCGTTCGACGGCTACACCGATCCGGCCAAG
AGCGAAGCGGTGATCCTCCGCGACGTGTTCAAGAAGGGCGACGCCTGGTTCAACACCGGCGACCTGATGCGC
GACATCGGTTTCAAGCACACCCAGTTCGTCGACCGTCTCGGCGACACCTTCCGCTGGAAGGGCGAGAACGTT
TCCACCACCGAGGTGGAAAACGCTCTCGGCGCCTTCGACGGGGTCGAAGATGCGGTGGTCTACGGCGTGGAG
ATTCCCGGCACCAACGGCCGCTGCGGGATGGCCGCACTGCGCCTGGCCGATGGCGTCGAACTGGACCGCGAC
GCCCTCGCCGCGCACCTCGACCGCGAGTTGCCGGCCTATGCCACGCCGGTGTTCCTGCGCCTGCTGCGCGAA
GTCGAGACCACCGGCACCTTCAAGTACAAGAAGACCGACCTCAAGCGCGACGCCTACGATCCCGCGCGGGTG
AGCGACAAACTCTTCGTCAGGTTGCCCGGCAGCGCCGGCTACCAGCCGCTGGACGCGGAGCTGTACCAGGCG
TTGCAGGAGCAGCGCTACCGCTTCTGA
Translation:
MTHADLITFNRFVARLPATFGRVPRMLRGLYYTAIRNREKSLSLGWALERAARLYPDNPAVLDGQRRISYAL
FNGWANRLARAFKAEGVGHGSVVAVMLENRVELLAILAALAKLGAIGALVNTTQRGKVLVHSLNLVKPGHFV
VGEELREVFEEVRQEVLGNAGHCYWVDDGDTLGDPGSPPMGWRNLMRLAQGQTSENLEDTGRVRLKDSCFYI
YTSGTTGLPKASIMSHGKWIKAYGGFGHSGLGLGRDDVLYLTLPCYHNNAVTVCWSAALAGGAAMALRRKFS
ASGFWKDVQHYRATCFGYIGELCRYLLNQPPCAEERGNSLTCMIGNGLRPSIWAEFKQRFEIQRITEFYASS
EGNIGFTNVFNFDNTVGFSPATYAIVRYDLENDRPVRDAKGFMEKVGKGEVGLLISEISAKWPFDGYTDPAK
SEAVILRDVFKKGDAWFNTGDLMRDIGFKHTQFVDRLGDTFRWKGENVSTTEVENALGAFDGVEDAVVYGVE
IPGTNGRCGMAALRLADGVELDRDALAAHLDRELPAYATPVFLRLLREVETTGTFKYKKTDLKRDAYDPARV
SDKLFVRLPGSAGYQPLDAELYQALQEQRYRF*
AnnotationID:448GeneID:439
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 11:11:39
Gene Name:
Confidence Code:3
GeneProduct:putative very-long-chain acyl-CoA synthetase
Cell Localization:()
Synonyms:PA2893
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0318
Secondary Functional Category(ies):Secondary metabolites biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
[Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]








   
Genomic Context:






   
Comment:


















    ReferenceID:881




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18023




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36156




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:439_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:439
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
755
                           PA2893_tr
                           translation of PA2893
                           608
                           99.83
                           99.83
                           0
                           3205.0
     

     
     
33266
                           gb|AAG06281.1|AE004715_7
                           (AE004715) probable very-long-chain acyl-CoA synthetase [Pseudomonas aeruginosa PAO1]
                           608
                           99.83
                           99.83
                           0
                           3205.0
     

     
     
33267
                           gb|AAK45501.1|
                           (AE007001) very-long-chain acyl-CoA synthetase, putative [Mycobacterium tuberculosis CDC1551]
                           620
                           41.61
                           54.19
                           35
                           1196.0
     

     
     
33268
                           emb|CAD94099.1|
                           (BX248338) PROBABLE FATTY-ACID-COA LIGASE FADD6 (FATTY-ACID-COA SYNTHETASE) (FATTY-ACID-COA SYNTHASE) [Mycobacterium bovis subsp. bovis AF2122/97]
                           620
                           41.61
                           54.19
                           35
                           1196.0
     

     
     
33269
                           dbj|BAC53050.1|
                           (AP005963) bll7785 [Bradyrhizobium japonicum USDA 110]
                           648
                           37.80
                           50.92
                           84
                           1033.0
     

     






      

          
GC ORFID: 43441How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2893Glimmer Score: 

          
Start: 2631936Stop: 2633762

          
Length: 1827


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2893 translation of PA2893Homolog Bit Score 1239.0

          
Other Homologs:  t_PA2893 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCACGCCGACCTGATCACTTTCAACCGTTTCGTTGCCCGCCTGCCTGCCACCTTCGGCCGCGTGCCG 
CGCATGCTGCGCGGCCTGTACTACACCGCGATCCGTAACCGCGAGAAGAGCCTGTCCCTGGGCTGGGCGCTG 
GAGCGCGCGGCACGCCTGTACCCGGACAACCCGGCGGTGCTCGACGGCCAGCGGCGGATCAGCTACGCCCTG 
TTCAACGGCTGGGCCAATCGCCTGGCGCGCGCCTTCAAGGCCGAGGGCGTAGGCCACGGCAGCGTGGTCGCG 
GTGATGCTGGAGAACCGCGTCGAGCTGCTGGCGATCCTCGCCGCCCTGGCCAAGCTCGGCGCCATCGGCGCA 
CTGGTCAACACCACCCAGCGCGGCAAGGTCCTGGTGCACAGCCTGAACCTGGTGAAGCCCGGCCACTTCGTG 
GTCGGCGAAGAGTTGCGCGAGGTGTTCGAGGAAGTCCGCCAGGAGGTGCTCGGCAACGCCGGCCATTGCTAC 
TGGGTCGACGACGGCGACACCCTCGGCGATCCCGGCTCGCCGCCGATGGGCTGGCGCAACCTGATGCGCCTG 
GCCCAGGGACAGACCTCGGAGAACCTCGAGGACACCGGCAGGGTGCGGCTCAAGGACTCCTGCTTCTACATC 
TACACCTCCGGCACCACCGGCCTGCCGAAAGCCTCGATCATGAGCCACGGCAAGTGGATCAAGGCCTACGGC 
GGCTTCGGCCATTCCGGCCTGGGCCTGGGCCGCGACGACGTGCTCTACCTGACCCTGCCCTGCTACCACAAC 
AACGCCGTGACCGTCTGCTGGAGCGCGGCGCTCGCCGGCGGCGCGGCCATGGCCCTGCGCCGCAAGTTCTCC 
GCCAGCGGTTTCTGGAAGGACGTGCAGCACTACCGGGCGACCTGCTTCGGCTACATCGGCGAACTCTGCCGC 
TACCTGCTGAACCAGCCGCCGTGCGCCGAGGAACGCGGCAATAGCCTGACCTGCATGATCGGCAACGGCCTG 
CGCCCGTCGATCTGGGCCGAGTTCAAGCAACGCTTCGAGATCCAGCGGATCACCGAGTTCTACGCTTCCAGC 
GAAGGCAACATCGGCTTCACCAACGTATTCAATTTCGACAATACGGTGGGCTTCTCCCCAGCCACCTACGCC 
ATCGTCCGCTACGACCTGGAGAACGACCGCCCGGTGCGCGACGCCAAGGGCTTCATGGAGAAGGTCGGCAAG 
GGCGAGGTCGGCCTGCTGATCAGCGAGATCAGCGCGAAGTGGCCGTTCGACGGCTACACCGATCCGGCCAAG 
AGCGAAGCGGTGATCCTCCGCGACGTGTTCAAGAAGGGCGACGCCTGGTTCAACACCGGCGACCTGATGCGC 
GACATCGGTTTCAAGCACACCCAGTTCGTCGACCGTCTCGGCGACACCTTCCGCTGGAAGGGCGAGAACGTT 
TCCACCACCGAGGTGGAAAACGCTCTCGGCGCCTTCGACGGGGTCGAAGATGCGGTGGTCTACGGCGTGGAG 
ATTCCCGGCACCAACGGCCGCTGCGGGATGGCCGCACTGCGCCTGGCCGATGGCGTCGAACTGGACCGCGAC 
GCCCTCGCCGCGCACCTCGACCGCGAGTTGCCGGCCTATGCCACGCCGGTGTTCCTGCGCCTGCTGCGCGAA 
GTCGAGACCACCGGCACCTTCAAGTACAAGAAGACCGACCTCAAGCGCGACGCCTACGATCCCGCGCGGGTG 
AGCGACAAACTCTTCGTCAGGTTGCCCGGCAGCGCCGGCTACCAGCCGCTGGACGCGGAGCTGTACCAGGCG 
TTGCAGGAGCAGCGCTACCGCTTCTGA