ViewGene
Locus Name:
GeneID:
Location:

GeneID:4389
TrivialName: PA14_15190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15190
PAO1 Ortholog Locus:PA3780
Sequence Length:495
Protein Length:164
Start: 1287673
Stop: 1287179
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07167.1|AE004797_2 (AE004797) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 161/164 (98%), Positives = 162/164 (98%)
Sequence:
ATGCCGTCATTGCTCAAGGGCATGCGCGCCGCGTTGCTGAACCTCGCCACGCTGCTGTTGCTGCTCGACCTG
GTCCTGCTCATCTACGGCGTGTTCGCCCGCTACCTGCTCGGCAGCTCGCCGATCTGGATGGACGAACTGGCC
CGCTACCTCATCATCGGCGCAGTAATGCTGGCGCTCGGCGCGGTATGGATGGAAGGCGGGCACATGCGCGTC
AATCTGCTGGAACAACGCCTGCCGCCGCGCCTGGCGCAGGTCCTCAGGCTCTACCAGTGGCTGCTGGCGCTG
GCCTTCTTCGCCTTCGCTGCCTGGGTCAGCACCCGCTACGCGCTGAACGCCGGGCGCTTCCGCAGCCTCGGC
CTGGGCGTCAGCCGCACCTGGCCGTTGCTCAGCCTGCCGCTCGGCTTCGGCCTGCTGACCCTCATGCTGTTG
CTCCAGGGGCCCTGGCCGCGGCAGCCGGCCAGCACCACCGTCGAGGGAGGGACGCAGGCATGA
Translation:
MPSLLKGMRAALLNLATLLLLLDLVLLIYGVFARYLLGSSPIWMDELARYLIIGAVMLALGAVWMEGGHMRV
NLLEQRLPPRLAQVLRLYQWLLALAFFAFAAWVSTRYALNAGRFRSLGLGVSRTWPLLSLPLGFGLLTLMLL
LQGPWPRQPASTTVEGGTQA*
AnnotationID:4395GeneID:4389
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 17:05:49
Gene Name:
Confidence Code:3
GeneProduct:putative TRAP-type C4-dicarboxylate transport protein
Cell Localization:()
Synonyms:PA3780
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3090,pfam04290
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3090, DctM, TRAP-type C4-dicarboxylate transport system, 
small permease component 
[Carbohydrate transport and metabolism]
CD-Length = 177 residues,  92.7% aligned
Score =  101 bits (252), Expect = 1e-22
Identities = 52/164 (31%), Positives = 77/164 (46%)

pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters
CD-Length = 133 residues,  99.2% aligned
Score = 91.4 bits (227), Expect = 1e-19
Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 2/132 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8779




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25922




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31775




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4389_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4389
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6725
                           PA3780_tr
                           translation of PA3780
                           164
                           98.17
                           98.78
                           0
                           817.0
     

     
     
180651
                           gb|AAG07167.1|AE004797_2
                           (AE004797) hypothetical protein PA3780 [Pseudomonas aeruginosa PAO1]
                           164
                           98.17
                           98.78
                           0
                           817.0
     

     






      

          
GC ORFID: 47391How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3780Glimmer Score: 

          
Start: 3666264Stop: 3666758

          
Length: 495


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3780 translation of PA3780Homolog Bit Score 319.0

          
Other Homologs:  t_PA3780 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGTCATTGCTCAAGGGCATGCGCGCCGCGTTGCTGAACCTCGCCACGCTGCTGTTGCTGCTCGACCTG 
GTCCTGCTCATCTACGGCGTGTTCGCCCGCTACCTGCTCGGCAGCTCGCCGATCTGGATGGACGAACTGGCC 
CGCTACCTCATCATCGGCGCAGTAATGCTGGCGCTCGGCGCGGTATGGATGGAAGGCGGGCACATGCGCGTC 
AATCTGCTGGAACAACGCCTGCCGCCGCGCCTGGCGCAGGTCCTCAGGCTCTACCAGTGGCTGCTGGCGCTG 
GCCTTCTTCGCCTTCGCTGCCTGGGTCAGCACCCGCTACGCGCTGAACGCCGGGCGCTTCCGCAGCCTCGGC 
CTGGGCGTCAGCCGCACCTGGCCGTTGCTCAGCCTGCCGCTCGGCTTCGGCCTGCTGACCCTCATGCTGTTG 
CTCCAGGGGCCCTGGCCGCGGCAGCCGGCCAGCACCACCGTCGAGGGAGGGACGCAGGCATGA