ViewGene
Locus Name:
GeneID:
Location:

GeneID:4387
TrivialName: PA14_28300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28300
PAO1 Ortholog Locus:PA2768
Sequence Length:483
Protein Length:160
Start: 2446747
Stop: 2446265
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06156.1|AE004704_10 (AE004704) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/160 (98%), Positives = 159/160 (99%)
Sequence:
ATGACTGCCTCCCCTTCCCCGGTTTCCGCCACGCCTTGGCTGACCCTGAGCATTCGCCTGATGGCCGGCGGC
TTCCTGCTGTTCTTCGGCCTGGCCCTGGCCACGCTGCTCCTGCGGCTCGACCAGTCGCTGCTCGACTCCGAC
GCCGGGCGCCTGCTGCTCCGCCTGGTTCGCTGGGGCGACCAGCAAGGCGGCGGACAGCACTATGAGCTAATG
ATCTCGACGATCTACCTGGTCTGGGGCGCATTCCTCTGGCGCGCCGCCAGCCAGCCCTTCCGCCACCGGCTG
TTCATCGACTTCACCGTGGCGGCCAATGCCGCGCACTTCGGCCTGATGCTCCTGCAGGGACTGTTGATGCCC
GGCGAACACATCCACCTGGCCGGCGATGTCCTGCTGGGCTGGGCCTCGCTGGTGCCGCTGATGCTGTTCTGG
ATACCGCAACGCAAGCGGGCAGCCCCTTCGCTCGCCGTCGAGCGGAGGTGA
Translation:
MTASPSPVSATPWLTLSIRLMAGGFLLFFGLALATLLLRLDQSLLDSDAGRLLLRLVRWGDQQGGGQHYELM
ISTIYLVWGAFLWRAASQPFRHRLFIDFTVAANAAHFGLMLLQGLLMPGEHIHLAGDVLLGWASLVPLMLFW
IPQRKRAAPSLAVERR*
AnnotationID:4393GeneID:4387
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 21:09:00
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2768
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8775




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25918




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4387
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6723
                           PA2768_tr
                           translation of PA2768
                           160
                           98.12
                           99.37
                           0
                           817.0
     

     
     
180649
                           gb|AAG06156.1|AE004704_10
                           (AE004704) hypothetical protein PA2768 [Pseudomonas aeruginosa PAO1]
                           160
                           98.12
                           99.37
                           0
                           817.0
     

     






      

          
GC ORFID: 47389How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2768Glimmer Score: 

          
Start: 2507179Stop: 2507661

          
Length: 483


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2768 translation of PA2768Homolog Bit Score 319.0

          
Other Homologs:  t_PA2768 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGCCTCCCCTTCCCCGGTTTCCGCCACGCCTTGGCTGACCCTGAGCATTCGCCTGATGGCCGGCGGC 
TTCCTGCTGTTCTTCGGCCTGGCCCTGGCCACGCTGCTCCTGCGGCTCGACCAGTCGCTGCTCGACTCCGAC 
GCCGGGCGCCTGCTGCTCCGCCTGGTTCGCTGGGGCGACCAGCAAGGCGGCGGACAGCACTATGAGCTAATG 
ATCTCGACGATCTACCTGGTCTGGGGCGCATTCCTCTGGCGCGCCGCCAGCCAGCCCTTCCGCCACCGGCTG 
TTCATCGACTTCACCGTGGCGGCCAATGCCGCGCACTTCGGCCTGATGCTCCTGCAGGGACTGTTGATGCCC 
GGCGAACACATCCACCTGGCCGGCGATGTCCTGCTGGGCTGGGCCTCGCTGGTGCCGCTGATGCTGTTCTGG 
ATACCGCAACGCAAGCGGGCAGCCCCTTCGCTCGCCGTCGAGCGGAGGTGA