ViewGene
Locus Name:
GeneID:
Location:

GeneID:4384
TrivialName: PA14_05410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05410
PAO1 Ortholog Locus:PA0415
Sequence Length:507
Protein Length:168
Start: 477315
Stop: 477821
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03804.1|AE004478_9 (AE004478) probable chemotaxis protein [Pseudomonas aeruginosa PAO1]
Identities = 165/168 (98%), Positives = 166/168 (98%)
Sequence:
ATGAACCAGGCCGTGATCGAGCAGGATGGCATGAGCCGGAACACCCCAGCCAACCCGACCCCGGACAGCCTC
ACCGGGCTGCTCCTGCCGCTGAGCGACCGCACCCTGCTGTTGCCCAACGTCGCCGTGGCCGAACTGATCGCC
TATCGCAACCCGCAGGTCGCCGCCGGCGTGCCGCAGTGGTACCTGGGCCAGGTGGCCTGGCGCGACCTGCGC
CTGCCGCTGCTGTCCTTCGAGGCGGCCTCCAGCGGCGAACAGCAGCCGGTACTCGGCAGCAGCGCGCGGGTG
GTGGTCATCAACGCCCTCGGCGGACGACCCCATGTGAAATTCCTCGCCCTGCTGGTGCAGGGCATTCCGCGC
TCGGTGCGGCTGGACGCCAATCTCGCGAGCACCGCCGCGCCGCTGGCGGCGCTGGAACTGGCGGCGGTGGAC
ATCGGCGGCGAAACCGCGCGGATTCCGGACCTGGCCGGGCTCGAAGAGAAGCTCGCCGACGCCGGCCTGATC
TGA
Translation:
MNQAVIEQDGMSRNTPANPTPDSLTGLLLPLSDRTLLLPNVAVAELIAYRNPQVAAGVPQWYLGQVAWRDLR
LPLLSFEAASSGEQQPVLGSSARVVVINALGGRPHVKFLALLVQGIPRSVRLDANLASTAAPLAALELAAVD
IGGETARIPDLAGLEEKLADAGLI*
AnnotationID:4390GeneID:4384
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 08:08:06
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis protein methyltransferase CheR
Cell Localization:()
Synonyms:chpC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00588,smart00260
Secondary Functional Category(ies):two-component regulatory system
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70553.1|AE016698_1 (AE016792) chemotaxis protein, putative [Pseudomonas putida KT2440]
          Length = 157

 Score =  142 bits (358), Expect = 8e-34
 Identities = 81/145 (55%), Positives = 96/145 (66%), Gaps = 3/145 (2%)








 
Structural Features:
cd00588, CheW_like, CheW-like domain.
CD-Length = 136 residues,  99.3% aligned
Score = 59.5 bits (144), Expect = 2e-10
Identities = 30/137 (21%), Positives = 45/137 (32%), Gaps = 4/137 (2%)

smart00260, CheW, Two component signalling adaptor domain
CD-Length = 138 residues,  90.6% aligned
Score = 51.4 bits (123), Expect = 6e-08
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 10/131 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8769




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25912




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33740




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4384_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4384
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6720
                           PA0415_tr
                           translation of PA0415
                           168
                           98.21
                           98.80
                           0
                           820.0
     

     
     
180643
                           gb|AAG03804.1|AE004478_9
                           (AE004478) probable chemotaxis protein [Pseudomonas aeruginosa PAO1]
                           168
                           98.21
                           98.80
                           0
                           820.0
     

     
     
180644
                           gb|AAC23933.1|
                           (U79580) ChpC [Pseudomonas aeruginosa]
                           168
                           98.21
                           98.80
                           0
                           820.0
     

     
     
180645
                           gb|AAO58457.1|
                           (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           168
                           55.95
                           66.66
                           12
                           441.0
     

     
     
180646
                           gb|AAN70553.1|AE016698_1
                           (AE016792) chemotaxis protein, putative [Pseudomonas putida KT2440]
                           172
                           48.25
                           58.72
                           19
                           352.0
     

     






      

          
GC ORFID: 47386How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0415Glimmer Score: 

          
Start: 6278657Stop: 6279163

          
Length: 507


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0415 translation of PA0415Homolog Bit Score 320.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3355 (ORF: BLASTX 173.0), t_PA0415 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCAGGCCGTGATCGAGCAGGATGGCATGAGCCGGAACACCCCAGCCAACCCGACCCCGGACAGCCTC 
ACCGGGCTGCTCCTGCCGCTGAGCGACCGCACCCTGCTGTTGCCCAACGTCGCCGTGGCCGAACTGATCGCC 
TATCGCAACCCGCAGGTCGCCGCCGGCGTGCCGCAGTGGTACCTGGGCCAGGTGGCCTGGCGCGACCTGCGC 
CTGCCGCTGCTGTCCTTCGAGGCGGCCTCCAGCGGCGAACAGCAGCCGGTACTCGGCAGCAGCGCGCGGGTG 
GTGGTCATCAACGCCCTCGGCGGACGACCCCATGTGAAATTCCTCGCCCTGCTGGTGCAGGGCATTCCGCGC 
TCGGTGCGGCTGGACGCCAATCTCGCGAGCACCGCCGCGCCGCTGGCGGCGCTGGAACTGGCGGCGGTGGAC 
ATCGGCGGCGAAACCGCGCGGATTCCGGACCTGGCCGGGCTCGAAGAGAAGCTCGCCGACGCCGGCCTGATC 
TGA