ViewGene
Locus Name:
GeneID:
Location:

GeneID:4382
TrivialName: PA14_63110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63110
PAO1 Ortholog Locus:PA4773
Sequence Length:483
Protein Length:160
Start: 5633510
Stop: 5633992
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08159.1|AE004891_1 (AE004891) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 160/160 (100%), Positives = 160/160 (100%)
Sequence:
ATGGCAATTCAACCGTTGCGACTCGATCCGATCACCGTGCTCGGCAAGCAACTGGTCATCGAGCTGTTCGAC
TGCGTCGACCAGCGCTTCGACGATATCCAGTGGATCGAGGAAAGCATGCTCGAGGCCGCCCGCCAGGCCAAC
GCCACCATCATCACCTCGGCGTTCCACAAGTTCAGCCCGATCGGCATCTCCGGCGTGGTGGTGATCGCCGAA
TCGCACCTGGCGATCCATACCTGGCCGGAGTACGGCTATGCCGCGGTCGACGTGTTCACCTGCGGCGACGTG
CTCGATGGCGCCCAGGCCGTGCGCGTGCTCAGCGAACGCCTGGGCAGCCGTCGGCACCTGATCTCGAGCATG
GACCGCGGCCTCGGCGGCCATCGCCTGGGGCTGCTCAGCCGCAGCCTGGCCGGCAATGGCCCGGTCGACGAA
GACAGCCCGACCCTGCGCTGGGCGCTGGGCCAGGGCACGGGGGTGGCCTGA
Translation:
MAIQPLRLDPITVLGKQLVIELFDCVDQRFDDIQWIEESMLEAARQANATIITSAFHKFSPIGISGVVVIAE
SHLAIHTWPEYGYAAVDVFTCGDVLDGAQAVRVLSERLGSRRHLISSMDRGLGGHRLGLLSRSLAGNGPVDE
DSPTLRWALGQGTGVA*
AnnotationID:4388GeneID:4382
AnnotatorUID: danlee
Modification Date/Time: 2005-07-07 17:05:38
Gene Name:
Confidence Code:3
GeneProduct:putative S-adenosylmethionine decarboxylase proenzyme
Cell Localization:()
Synonyms:PA4773
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02675
Secondary Functional Category(ies):putative enzyme
EC Number:4.1.1.50
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAP11489.1| (AE017012) S-adenosylmethionine decarboxylase proenzyme [Bacillus
           cereus ATCC 14579]
          Length = 130

 Score =  110 bits (276), Expect = 2e-24
 Identities = 49/122 (40%), Positives = 82/122 (67%)

>gb|AAO35877.1| (AE015940) S-adenosylmethionine decarboxylase proenzyme
           [Clostridium tetani E88]
          Length = 126

 Score =  110 bits (274), Expect = 4e-24
 Identities = 50/111 (45%), Positives = 77/111 (69%)








 
Structural Features:
pfam02675, AdoMet_dc, S-adenosylmethionine decarboxylase. 
CD-Length = 107 residues, 100.0% aligned
Score =  151 bits (384), Expect = 2e-38
Identities = 57/107 (53%), Positives = 74/107 (69%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8765




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25908




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37659




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4382_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4382
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6718
                           PA4773_tr
                           translation of PA4773
                           160
                           99.99
                           99.99
                           0
                           821.0
     

     
     
180491
                           gb|AAG08159.1|AE004891_1
                           (AE004891) hypothetical protein PA4773 [Pseudomonas aeruginosa PAO1]
                           160
                           99.99
                           99.99
                           0
                           821.0
     

     
     
180492
                           gb|AAD35739.1|AE001739_2
                           (AE001739) conserved hypothetical protein [Thermotoga maritima]
                           164
                           37.19
                           53.65
                           38
                           297.0
     

     
     
180503
                           gb|AAL82054.1|
                           (AE010287) hypothetical protein [Pyrococcus furiosus DSM 3638]
                           166
                           33.13
                           48.79
                           33
                           242.0
     

     
     
180493
                           gb|AAB98301.1|
                           (U67486) conserved hypothetical protein [Methanococcus jannaschii] [Methanocaldococcus jannaschii]
                           174
                           32.75
                           46.55
                           53
                           264.0
     

     






      

          
GC ORFID: 47384How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4773Glimmer Score: 

          
Start: 4897190Stop: 4897672

          
Length: 483


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4773 translation of PA4773Homolog Bit Score 320.0

          
Other Homologs:  t_PA4773 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAATTCAACCGTTGCGACTCGATCCGATCACCGTGCTCGGCAAGCAACTGGTCATCGAGCTGTTCGAC 
TGCGTCGACCAGCGCTTCGACGATATCCAGTGGATCGAGGAAAGCATGCTCGAGGCCGCCCGCCAGGCCAAC 
GCCACCATCATCACCTCGGCGTTCCACAAGTTCAGCCCGATCGGCATCTCCGGCGTGGTGGTGATCGCCGAA 
TCGCACCTGGCGATCCATACCTGGCCGGAGTACGGCTATGCCGCGGTCGACGTGTTCACCTGCGGCGACGTG 
CTCGATGGCGCCCAGGCCGTGCGCGTGCTCAGCGAACGCCTGGGCAGCCGTCGGCACCTGATCTCGAGCATG 
GACCGCGGCCTCGGCGGCCATCGCCTGGGGCTGCTCAGCCGCAGCCTGGCCGGCAATGGCCCGGTCGACGAA 
GACAGCCCGACCCTGCGCTGGGCGCTGGGCCAGGGCACGGGGGTGGCCTGA