ViewGene
Locus Name:
GeneID:
Location:

GeneID:4380
TrivialName: PA14_41880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41880
PAO1 Ortholog Locus:PA1753
Sequence Length:498
Protein Length:165
Start: 3741053
Stop: 3740556
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05142.1|AE004601_7 (AE004601) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 165/165 (100%), Positives = 165/165 (100%)
Sequence:
ATGATTCGTTCGATTCTCTATGCCACCGATCTGGGGCTCTATGCTCCCTATGTCCTGCAACACGCCCTGTCG
CTGACCCGCGCCTACAACGCCGAGCTCTATGTCGTCCATGTGGTGGAGCCCCTCGGGCTGTTCGCCGAGTCG
GTCCTGCAGACCTACCTTGACACCGAGCGTCTCCAGGACCTGCGGGCGCAAGGGCTGGACAACGTCATGGAA
AGCATCGAGAAGCGGGTCCTGGAAGGGTTTCGCGATGAACTCGGCGAGTTGCCCCAGGATGCGGCGCTGGTC
AAGAGCGTGCGGGTGGTGCAGGGCGACCCGCCGCAGATGATCCTCGATGAGGCGGAAAAGCTGGCCGTGGAC
CTGATCGTCGCCGGCAGCCATAGCCACGGCACCCAGCTCGACACGCCGCTGGGCCGGACTGCCGCGCGTCTG
GTGCAACTGGCGGAGGTACCGGTGTACCTGGTGCCGATGTTGCAGCACCGTAGTCGCGACCTGTAG
Translation:
MIRSILYATDLGLYAPYVLQHALSLTRAYNAELYVVHVVEPLGLFAESVLQTYLDTERLQDLRAQGLDNVME
SIEKRVLEGFRDELGELPQDAALVKSVRVVQGDPPQMILDEAEKLAVDLIVAGSHSHGTQLDTPLGRTAARL
VQLAEVPVYLVPMLQHRSRDL*
AnnotationID:4386GeneID:4380
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 21:09:33
Gene Name:
Confidence Code:3
GeneProduct:universal stress protein
Cell Localization:()
Synonyms:PA1753
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00582
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67939.1|AE016426_4 (AE016782) universal stress protein family [Pseudomonas putida
           KT2440]
          Length = 165

 Score =  212 bits (540), Expect = 6e-55
 Identities = 103/163 (63%), Positives = 134/163 (82%), Gaps = 1/163 (0%)

>gb|AAO55792.1| (AE016864) universal stress protein family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 167

 Score =  195 bits (496), Expect = 8e-50
 Identities = 95/158 (60%), Positives = 126/158 (79%)






 
Structural Features:
pfam00582, Usp, Universal stress protein family. 
CD-Length = 139 residues, 100.0% aligned
Score = 67.1 bits (163), Expect = 8e-13
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 17/156 (10%)








   
Genomic Context:






   
Comment:


















    ReferenceID:8761




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25904




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37154




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4380_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4380
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6716
                           PA1753_tr
                           translation of PA1753
                           165
                           99.99
                           99.99
                           0
                           820.0
     

     
     
180443
                           gb|AAG05142.1|AE004601_7
                           (AE004601) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           165
                           99.99
                           99.99
                           0
                           820.0
     

     
     
180444
                           gb|AAN67939.1|AE016426_4
                           (AE016782) universal stress protein family [Pseudomonas putida KT2440]
                           166
                           62.04
                           80.72
                           2
                           538.0
     

     
     
180445
                           gb|AAO55792.1|
                           (AE016864) universal stress protein family [Pseudomonas syringae pv. tomato str. DC3000]
                           170
                           57.05
                           75.88
                           8
                           493.0
     

     






      

          
GC ORFID: 47382How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1753Glimmer Score: 

          
Start: 1212856Stop: 1213353

          
Length: 498


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1753 translation of PA1753Homolog Bit Score 320.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1057 (ORF: BLASTX 201.0), t_PA1753 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTCGTTCGATTCTCTATGCCACCGATCTGGGGCTCTATGCTCCCTATGTCCTGCAACACGCCCTGTCG 
CTGACCCGCGCCTACAACGCCGAGCTCTATGTCGTCCATGTGGTGGAGCCCCTCGGGCTGTTCGCCGAGTCG 
GTCCTGCAGACCTACCTTGACACCGAGCGTCTCCAGGACCTGCGGGCGCAAGGGCTGGACAACGTCATGGAA 
AGCATCGAGAAGCGGGTCCTGGAAGGGTTTCGCGATGAACTCGGCGAGTTGCCCCAGGATGCGGCGCTGGTC 
AAGAGCGTGCGGGTGGTGCAGGGCGACCCGCCGCAGATGATCCTCGATGAGGCGGAAAAGCTGGCCGTGGAC 
CTGATCGTCGCCGGCAGCCATAGCCACGGCACCCAGCTCGACACGCCGCTGGGCCGGACTGCCGCGCGTCTG 
GTGCAACTGGCGGAGGTACCGGTGTACCTGGTGCCGATGTTGCAGCACCGTAGTCGCGACCTGTAG