ViewGene
Locus Name:
GeneID:
Location:

GeneID:438
TrivialName: PA14_58650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58650
PAO1 Ortholog Locus:PA4520
Sequence Length:2022
Protein Length:673
Start: 5227457
Stop: 5225436
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07908.1|AE004866_2 (AE004866) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 670/673 (99%), Positives = 670/673 (99%)
Sequence:
GTGAAGACCGTACTCTATCCCGCTATCGCGCTGATGAACCGGCTCAGCTTCGGCATGAAGTTCGGCCTGATC
AGCGTGCTGTTCTTCCTGCCGCTGCTGATCACCAGCTTCTATCTGGTGCGCGATGCCTATCGCCAGTTCAGC
GACACCCGGATCGAACTGCAGAGCTTGACGCTGCTGGGTAGCGGACTTCAGATCCGGCGTGGCCTGGAGTCC
CTCAACGATCTGTTGCAGATCAATGCGGTCATCGGCCAGTCCGGCAAGGCCGGCGATCTGGAAGCGCGCATC
GCGGACGTCCAGAAGGGGCTGCGCGGGCGGCTCGAGGCGCTGGCGCCGCTCAGCGAGGATGGTGCGGCGGTA
GCCGAATTCGAGGCCCAGCGCGACCGGTTGCTCAACGGCTTGCAGGCCGTGGAGGCCGAAGGGTCCCTGCAG
GGCAAGGGCGCACGGGCGGAGAAGCTGCTCGGTAGCGCACAGGTATTCATCAAGTTGCTCATCGCCCAGGCC
GGGCTCAGCCAGGACAGCCAGCGCCAGGTGCGCCAGCTCAGCGAGCTGGTCGGCTCGATAACGCCGGAGGTG
ACGGCGGCCATCAGCAAGGGGCGCGCCATCGGCGCCTACTCCCTGGGCCAGGGTTTCCTCAATTCGTCCTCC
AGCGCGCGGCTCGACGAACTGCTGCTGGAGTTCGAGAAACTGCATGGCGAGTACGGCCTGAAGCTGCAGGAG
TCCCTGGCCGGCAGCCCACCGGCGCTCGAGGAGGCCGCCCAGGCCAGTCGCGAGACCCTGAAGAGCCTGGGG
CAGTTGTTCGAGGACCGGGTGATCGTGGCCGAGACGCTGGATACCCCGTGGACGCAGTTCTACGATCAGGTC
AGCGCGGCGATGGACAAGACCTACCAGCTCGACGACGCCGTTCTCGGCTATCTCGATACCCAGTTGCAAAAG
CGCCTGCAACAGGTGCGCACGCAGATGCTGTTGCTAGTCGCCGCGCTGGCCGTGGTTTTCGCCGCGATCCTA
TACCTCTACGGCGGTTTCTACGTCTCCACCCGCGCCACCCTGAAGGATCTCGGGCGAATGATGGAGCGCGTC
GCCGGCGGCGACATGACGGTCAGCTTCCAGGCCCGCAGCCGTGACGAACTGGGCGAGCTGGGACAATCGTTC
AACGAGTCGGTGGCGAAGATCCACGACCTGATCGAGCGGGTCAGCCAGACCGTCGGCGAGGTCGAGCGGCAG
ACCCTGCGCGTCGAGTCGGTGTCGGCCGAAAGCAACCAGGCGGTAGCCGGGCAACGCAGCCAGATCGAGCAG
GTGGCCACGGCGATGAACCAGATGGCCGCTACCGCCCAGGAAGTGGCACGCAGCGCGGCGATGGCGGTGAGC
AGCGCGAACAGCGTGAACCAGGAAACCCTCAGCGGGCGCAGCCTGGTCGAGTCGCAGGTGGGTAGCATCCAG
CGCCTGGCCGGCGAGATCGACCAGTCGGTGGCGGCGATCAATCGCCTGGCCAGTGACAGCGCCTCGATCAGC
CAGGTGCTGGATGTGATCAAGGGCATCGCCGAACAGACCAACCTGCTGGCGCTCAATGCGGCGATCGAGGCC
GCTCGTGCCGGGGAGCAGGGGCGCGGTTTCGCGGTGGTGGCCGACGAGGTGCGCACGCTGGCCAAGCGCACC
CAGCAATCCACCGCcgAGATCGAACAGATGATCCTGCGCCTGCAGGGCGGCGTCGATGCGGCGGTGAAGGCG
ATGGGCAGCAGCCACCATACCGCCGATGGCACGGTCAACGAGTCGGCGCAGGTGCAGCAGGCACTGGAGAAT
ATCCTCGGCGCGGTGGGCATGATCGTCGACCAGAACCAGCAGATCGCCGCCGCCGCCGAGCAACAGACCGCC
GTGGCCCACGATATCGACCAGAACATCGTCGAGATCAACCAGGCCGGCGAGCGCACCGCGGAAGGCGCCAGC
CAGACCGAACGGGCCAGCCGCGAACTGGGCGCCCAGGTGACCCAGCTGAAACGCCTGATCGGTGCGTTCCGG
GTGTAG
Translation:
MKTVLYPAIALMNRLSFGMKFGLISVLFFLPLLITSFYLVRDAYRQFSDTRIELQSLTLLGSGLQIRRGLES
LNDLLQINAVIGQSGKAGDLEARIADVQKGLRGRLEALAPLSEDGAAVAEFEAQRDRLLNGLQAVEAEGSLQ
GKGARAEKLLGSAQVFIKLLIAQAGLSQDSQRQVRQLSELVGSITPEVTAAISKGRAIGAYSLGQGFLNSSS
SARLDELLLEFEKLHGEYGLKLQESLAGSPPALEEAAQASRETLKSLGQLFEDRVIVAETLDTPWTQFYDQV
SAAMDKTYQLDDAVLGYLDTQLQKRLQQVRTQMLLLVAALAVVFAAILYLYGGFYVSTRATLKDLGRMMERV
AGGDMTVSFQARSRDELGELGQSFNESVAKIHDLIERVSQTVGEVERQTLRVESVSAESNQAVAGQRSQIEQ
VATAMNQMAATAQEVARSAAMAVSSANSVNQETLSGRSLVESQVGSIQRLAGEIDQSVAAINRLASDSASIS
QVLDVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAKRTQQSTAEIEQMILRLQGGVDAAVKA
MGSSHHTADGTVNESAQVQQALENILGAVGMIVDQNQQIAAAAEQQTAVAHDIDQNIVEINQAGERTAEGAS
QTERASRELGAQVTQLKRLIGAFRV*
AnnotationID:447GeneID:438
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 15:03:07
Gene Name:
Confidence Code:3
GeneProduct:putative methyl-accepting chemotaxis protein
Cell Localization:()
Synonyms:PA4520
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70231.1|AE016662_7 (AE016791) methyl-accepting chemotaxis transducer [Pseudomonas
           putida KT2440]
          Length = 639

 Score =  257 bits (656), Expect = 2e-67
 Identities = 206/644 (31%), Positives = 314/644 (48%), Gaps = 50/644 (7%)






 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  95.1% aligned
Score =  191 bits (485), Expect = 6e-49
Identities = 123/391 (31%), Positives = 196/391 (50%), Gaps = 3/391 (0%)

smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CD-Length = 262 residues,  99.6% aligned
Score =  180 bits (457), Expect = 1e-45
Identities = 96/261 (36%), Positives = 148/261 (56%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) 
signaling domain.
CD-Length = 251 residues,  98.8% aligned
Score =  174 bits (442), Expect = 6e-44
Identities = 101/248 (40%), Positives = 150/248 (60%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14137




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18021




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31567




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:438_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:438
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
747
                           PA4520_tr
                           translation of PA4520
                           673
                           99.55
                           99.55
                           0
                           3209.0
     

     
     
33238
                           gb|AAG07908.1|AE004866_2
                           (AE004866) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           673
                           99.40
                           99.55
                           0
                           3206.0
     

     
     
33241
                           gb|AAG06308.1|AE004718_5
                           (AE004718) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           689
                           31.93
                           45.13
                           160
                           668.0
     

     
     
749
                           PA2920_tr
                           translation of PA2920
                           689
                           31.93
                           45.13
                           160
                           668.0
     

     
     
33242
                           gb|AAG06040.1|AE004694_3
                           (AE004694) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           701
                           31.81
                           46.07
                           168
                           672.0
     

     






      

          
GC ORFID: 43440How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4520Glimmer Score: 

          
Start: 4491136Stop: 4489115

          
Length: 2022


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4520 translation of PA4520Homolog Bit Score 1240.0

          
Other Homologs:  t_PA2920 (ORF: BLASTX 249.0), t_PA2652 (ORF: BLASTX 249.0), t_PA1608 (ORF: BLASTX 238.0), psyr_15may02_Scaffold3_revised_gene4244 (ORF: BLASTX 232.0), t_PA2561 (ORF: BLASTX 230.0), t_PA1561 (ORF: BLASTX 221.0), t_PA4520 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAGACCGTACTCTATCCCGCTATCGCGCTGATGAACCGGCTCAGCTTCGGCATGAAGTTCGGCCTGATC 
AGCGTGCTGTTCTTCCTGCCGCTGCTGATCACCAGCTTCTATCTGGTGCGCGATGCCTATCGCCAGTTCAGC 
GACACCCGGATCGAACTGCAGAGCTTGACGCTGCTGGGTAGCGGACTTCAGATCCGGCGTGGCCTGGAGTCC 
CTCAACGATCTGTTGCAGATCAATGCGGTCATCGGCCAGTCCGGCAAGGCCGGCGATCTGGAAGCGCGCATC 
GCGGACGTCCAGAAGGGGCTGCGCGGGCGGCTCGAGGCGCTGGCGCCGCTCAGCGAGGATGGTGCGGCGGTA 
GCCGAATTCGAGGCCCAGCGCGACCGGTTGCTCAACGGCTTGCAGGCCGTGGAGGCCGAAGGGTCCCTGCAG 
GGCAAGGGCGCACGGGCGGAGAAGCTGCTCGGTAGCGCACAGGTATTCATCAAGTTGCTCATCGCCCAGGCC 
GGGCTCAGCCAGGACAGCCAGCGCCAGGTGCGCCAGCTCAGCGAGCTGGTCGGCTCGATAACGCCGGAGGTG 
ACGGCGGCCATCAGCAAGGGGCGCGCCATCGGCGCCTACTCCCTGGGCCAGGGTTTCCTCAATTCGTCCTCC 
AGCGCGCGGCTCGACGAACTGCTGCTGGAGTTCGAGAAACTGCATGGCGAGTACGGCCTGAAGCTGCAGGAG 
TCCCTGGCCGGCAGCCCACCGGCGCTCGAGGAGGCCGCCCAGGCCAGTCGCGAGACCCTGAAGAGCCTGGGG 
CAGTTGTTCGAGGACCGGGTGATCGTGGCCGAGACGCTGGATACCCCGTGGACGCAGTTCTACGATCAGGTC 
AGCGCGGCGATGGACAAGACCTACCAGCTCGACGACGCCGTTCTCGGCTATCTCGATACCCAGTTGCAAAAG 
CGCCTGCAACAGGTGCGCACGCAGATGCTGTTGCTAGTCGCCGCGCTGGCCGTGGTTTTCGCCGCGATCCTA 
TACCTCTACGGCGGTTTCTACGTCTCCACCCGCGCCACCCTGAAGGATCTCGGGCGAATGATGGAGCGCGTC 
GCCGGCGGCGACATGACGGTCAGCTTCCAGGCCCGCAGCCGTGACGAACTGGGCGAGCTGGGACAATCGTTC 
AACGAGTCGGTGGCGAAGATCCACGACCTGATCGAGCGGGTCAGCCAGACCGTCGGCGAGGTCGAGCGGCAG 
ACCCTGCGCGTCGAGTCGGTGTCGGCCGAAAGCAACCAGGCGGTAGCCGGGCAACGCAGCCAGATCGAGCAG 
GTGGCCACGGCGATGAACCAGATGGCCGCTACCGCCCAGGAAGTGGCACGCAGCGCGGCGATGGCGGTGAGC 
AGCGCGAACAGCGTGAACCAGGAAACCCTCAGCGGGCGCAGCCTGGTCGAGTCGCAGGTGGGTAGCATCCAG 
CGCCTGGCCGGCGAGATCGACCAGTCGGTGGCGGCGATCAATCGCCTGGCCAGTGACAGCGCCTCGATCAGC 
CAGGTGCTGGATGTGATCAAGGGCATCGCCGAACAGACCAACCTGCTGGCGCTCAATGCGGCGATCGAGGCC 
GCTCGTGCCGGGGAGCAGGGGCGCGGTTTCGCGGTGGTGGCCGACGAGGTGCGCACGCTGGCCAAGCGCACC 
CAGCAATCCACCGCcgAGATCGAACAGATGATCCTGCGCCTGCAGGGCGGCGTCGATGCGGCGGTGAAGGCG 
ATGGGCAGCAGCCACCATACCGCCGATGGCACGGTCAACGAGTCGGCGCAGGTGCAGCAGGCACTGGAGAAT 
ATCCTCGGCGCGGTGGGCATGATCGTCGACCAGAACCAGCAGATCGCCGCCGCCGCCGAGCAACAGACCGCC 
GTGGCCCACGATATCGACCAGAACATCGTCGAGATCAACCAGGCCGGCGAGCGCACCGCGGAAGGCGCCAGC 
CAGACCGAACGGGCCAGCCGCGAACTGGGCGCCCAGGTGACCCAGCTGAAACGCCTGATCGGTGCGTTCCGG 
GTGTAG