ViewGene
Locus Name:
GeneID:
Location:

GeneID:4379
TrivialName: PA14_41980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41980
PAO1 Ortholog Locus:PA1745
Sequence Length:489
Protein Length:162
Start: 3746487
Stop: 3746975
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05134.1|AE004600_10 (AE004600) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 162/162 (100%), Positives = 162/162 (100%)
Sequence:
ATGCCGAAATGGATTGCACTTTGCCTGATCCCGCTGTTGGCAAGCTGCGCCACCTGCCGCCAGGACAGCGAC
AGGGAAAAACTGCTGTACGAGAACGACATGCTGCAGGCGAAACTGATCATCGTCGCCAACGACCGCGATCGC
CTGCCGCTGGCCCAGGCCCTGCTGGAGCGCGCGGCGCGCGACGACCGCAGCGGCGAGGCGGACTTCTACCAG
GCCGTGCTGATCGCTCGCCGCGACGGCCAGGCCAGCGATTGCGAGCGCATCACCCGCCTCCTCGAACGTTCC
GCCGAGCGACGCTACCCGCTGGCCAACGCGATGCTCTACAAGATCTACGCCGAGCCCTTCCTGTTGCCGCGC
GCCGATATTCCCAAGGCCGAGACCTATCGCCAGGCCTACGCCGAGCTGCCGGTCGCGCGCAGCGGCTACCCC
TCCTTCGAGCGAGCCCGGCAGGTGGTCGATCGCCTGCTCGCGCCGACTTCGTCCTGA
Translation:
MPKWIALCLIPLLASCATCRQDSDREKLLYENDMLQAKLIIVANDRDRLPLAQALLERAARDDRSGEADFYQ
AVLIARRDGQASDCERITRLLERSAERRYPLANAMLYKIYAEPFLLPRADIPKAETYRQAYAELPVARSGYP
SFERARQVVDRLLAPTSS*
AnnotationID:4385GeneID:4379
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 09:09:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1745
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8759




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25902




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4379
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6715
                           PA1745_tr
                           translation of PA1745
                           162
                           99.99
                           99.99
                           0
                           821.0
     

     
     
180442
                           gb|AAG05134.1|AE004600_10
                           (AE004600) hypothetical protein PA1745 [Pseudomonas aeruginosa PAO1]
                           162
                           99.99
                           99.99
                           0
                           821.0
     

     






      

          
GC ORFID: 47381How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1745Glimmer Score: 

          
Start: 1207422Stop: 1206934

          
Length: 489


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1745 translation of PA1745Homolog Bit Score 320.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6013 (ORF: BLASTX 115.0), t_PA1745 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGAAATGGATTGCACTTTGCCTGATCCCGCTGTTGGCAAGCTGCGCCACCTGCCGCCAGGACAGCGAC 
AGGGAAAAACTGCTGTACGAGAACGACATGCTGCAGGCGAAACTGATCATCGTCGCCAACGACCGCGATCGC 
CTGCCGCTGGCCCAGGCCCTGCTGGAGCGCGCGGCGCGCGACGACCGCAGCGGCGAGGCGGACTTCTACCAG 
GCCGTGCTGATCGCTCGCCGCGACGGCCAGGCCAGCGATTGCGAGCGCATCACCCGCCTCCTCGAACGTTCC 
GCCGAGCGACGCTACCCGCTGGCCAACGCGATGCTCTACAAGATCTACGCCGAGCCCTTCCTGTTGCCGCGC 
GCCGATATTCCCAAGGCCGAGACCTATCGCCAGGCCTACGCCGAGCTGCCGGTCGCGCGCAGCGGCTACCCC 
TCCTTCGAGCGAGCCCGGCAGGTGGTCGATCGCCTGCTCGCGCCGACTTCGTCCTGA